RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IMP4Q96G21 291 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 B3GALT6Q96L58 329 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SPATA13Q96N96 652 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BIRC8Q96P09 236 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TMEM237Q96Q45 408 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SMIM14Q96QK8 99 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 OLFM1Q99784 485 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SGPP1Q9BX95 441 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLC39A8Q9C0K1 460 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HOMER3Q9NSC5 361 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DDX43Q9NXZ2 648 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS54-202ENST00000354504 GALPQ9UBC7 116 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLC2A6Q9UGQ3 507 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PCSK1NQ9UHG2 260 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SARDHQ9UL12 918 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CLEC4EQ9ULY5 219 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ERVK-11Q9UQG0 969 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PIN4Q9Y237 131 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 PCDHB1Q9Y5F3 818 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 RAD54BQ9Y620 910 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CCT8L1PA6NM43 557 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 H0Y858 1186 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TRDMT1O14717 391 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 MED7O43513 233 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZBTB14O43829 449 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 LPXNO60711 386 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CLASP2O75122 1294 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 CDH16O75309 829 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 USP1O94782 785 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TOMM70O94826 608 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 C1RP00736 705 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TNNC2P02585 160 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 APOEP02649 317 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 OR4Q2P0C623 313 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HARSP12081 509 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 ERCC2P18074 760 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 EPORP19235 508 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ENPP1P22413 925 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 PSMB4P28070 264 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 NMBRP28336 390 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 STIP1P31948 543 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 RDXP35241 583 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 PNPLA4P41247 253 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 MAGEA9P43362 315 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLC11A1P49279 550 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 MAP3K7CLP57077 242 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 EIF3EP60228 445 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 CRADDP78560 199 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 XIAPP98170 497 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 E2F2Q14209 437 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 KIAA0040Q15053 153 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 BOLA3Q53S33 107 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CMPK2Q5EBM0 449 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FAM47CQ5HY64 1035 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CFAP58Q5T655 872 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 LCE5AQ5TCM9 118 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SEL1L2Q5TEA6 688 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 RFWD3Q6PCD5 774 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.33□□□□□ -2.042e-7■□□□□ 10
VPS54-202ENST00000354504 RINLQ6ZS11 566 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 Q6ZVL8 140 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 VPS36Q86VN1 386 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 C1QL4Q86Z23 238 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZNF610Q8N9Z0 462 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 VPS37AQ8NEZ2 397 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GADD45GIP1Q8TAE8 222 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 CD99L2Q8TCZ2 262 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TCP10LQ8TDR4 215 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DIS3LQ8TF46 1054 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 HTR3CQ8WXA8 447 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FAM131CQ96AQ9 280 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 LRRC45Q96CN5 670 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HSPBAP1Q96EW2 488 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 C11orf24Q96F05 449 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 PKNOX2Q96KN3 472 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 C7orf26Q96N11 449 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TOX2Q96NM4 488 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SLC22A12Q96S37 553 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 DMRTA2Q96SC8 542 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GPR22Q99680 433 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 C1QTNF3Q9BXJ4 246 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 KRTAP4-5Q9BYR2 181 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TRIM6Q9C030 488 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 LRMDAQ9H2I8 198 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CNOT10Q9H9A5 744 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 ZNF334Q9HCZ1 680 aaPredicted RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 LUC7LQ9NQ29 371 aaKnown RBP2.33□□□□□ -2.04
VPS54-202ENST00000354504 TLR9Q9NR96 1032 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 FGFR1OP2Q9NVK5 253 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 HSFX1Q9UBD0 423 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TCEAL9Q9UHQ7 104 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 GPR160Q9UJ42 338 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ANAPC5Q9UJX4 755 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ASB1Q9Y576 335 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 SVEP1Q4LDE5 3571 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 ATMQ13315 3056 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 A0A088AWK7 358 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 CCDC189A1A4V9 331 aa2.33□□□□□ -2.04
VPS54-202ENST00000354504 TRIM64A6NGJ6 449 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms