RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 DTNBP1Q96EV8 351 aa11.16□□□□□ -0.62
RTN3-204ENST00000354497 ZNF641Q96N77 438 aaPredicted RBP11.16□□□□□ -0.62
RTN3-204ENST00000354497 TWSG1Q9GZX9 223 aa11.16□□□□□ -0.62
RTN3-204ENST00000354497 CROTQ9UKG9 612 aa11.16□□□□□ -0.62
RTN3-204ENST00000354497 BLOC1S6Q9UL45 172 aa11.16□□□□□ -0.62
RTN3-204ENST00000354497 PLEKHM1Q9Y4G2 1056 aa11.16□□□□□ -0.62
RTN3-204ENST00000354497 BHMG1C9JSJ3 638 aaPredicted RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 DNAJB5O75953 348 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 CEACAM5P06731 702 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 FURINP09958 794 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 F8A1P23610 371 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 ERCC5P28715 1186 aaPredicted RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 EPHB2P29323 1055 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 TRIM23P36406 574 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 PPP1R2P41236 205 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 GABRB2P47870 512 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 FNTAP49354 379 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 CCZ1BP86790 482 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 CCZ1P86791 482 aaPredicted RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 NRG1Q02297 640 aaPredicted RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 FOXM1Q08050 763 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 MRPL49Q13405 166 aaKnown RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 NADK2Q4G0N4 442 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 CCDC185Q8N715 623 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 PLEKHG4BQ96PX9 1271 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 ULBP3Q9BZM4 244 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 SPRY4Q9C004 299 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 RETREG1Q9H6L5 497 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 ATP13A3Q9H7F0 1226 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 TRNAU1APQ9NX07 287 aaKnown RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 RCOR3Q9P2K3 495 aaPredicted RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 HOOK1Q9UJC3 728 aaKnown RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 TMEM59LQ9UK28 342 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 DNAJC12Q9UKB3 198 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 MAN1B1Q9UKM7 699 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 RAB21Q9UL25 225 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 NEU3Q9UQ49 428 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 TMEM184BQ9Y519 407 aaPredicted RBP11.15□□□□□ -0.62
RTN3-204ENST00000354497 DOCK4Q8N1I0 1966 aa11.15□□□□□ -0.62
RTN3-204ENST00000354497 CFAP69A5D8W1 941 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 A6NCN8 305 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 GOLGA6L4A6NEF3 574 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 FOXN3O00409 490 aaPredicted RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 EBAG9O00559 213 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 CREB3O43889 395 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 ERLIN1O75477 346 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 MAP3K6O95382 1288 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 CLDN1O95832 211 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 DLGAP3O95886 979 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 FUCA1P04066 466 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 SDC4P31431 198 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 ADCY8P40145 1251 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 ARHGAP25P42331 645 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 MARSP56192 900 aaKnown RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 RIPPLY3P57055 190 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 BCL2L1Q07817 233 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 NFATC2Q13469 925 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 SQSTM1Q13501 440 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 EXOC3L4Q17RC7 722 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 CCDC38Q502W7 563 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 CRTC2Q53ET0 693 aaPredicted RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 RAET1GQ6H3X3 334 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 C6orf15Q6UXA7 325 aaPredicted RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 MARK2Q7KZI7 788 aaKnown RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 DPPA4Q7L190 304 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 BNIPLQ7Z465 357 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 FMR1NBQ8N0W7 255 aaPredicted RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 PYROXD2Q8N2H3 581 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 RTL3Q8N8U3 475 aaKnown RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 OR8K1Q8NGG5 319 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 MIPOL1Q8TD10 442 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 PDCD6IPQ8WUM4 868 aaKnown RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 RXFP2Q8WXD0 754 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 STAMBPL1Q96FJ0 436 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 ELMO2Q96JJ3 720 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 TUBGCP5Q96RT8 1024 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 NOL6Q9H6R4 1146 aaKnown RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 NPDC1Q9NQX5 325 aaPredicted RBP11.14□□□□□ -0.63
RTN3-204ENST00000354497 FBXO8Q9NRD0 319 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 LUZP4Q9P127 313 aa11.14□□□□□ -0.63
RTN3-204ENST00000354497 PIPSLA2A3N6 862 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 GOLGA6L9A6NEM1 432 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 BIN1O00499 593 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 ZSCAN9O15535 394 aaPredicted RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 SKILP12757 684 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 ZNF28P17035 718 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 GM2AP17900 193 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 POU3F2P20265 443 aaPredicted RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 ELAVL4P26378 380 aaKnown RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 PEX19P40855 299 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 RGRP47804 291 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 PGDP52209 483 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 PMS2P54278 862 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 BPIFB4P59827 614 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 CCDC14Q49A88 953 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 PRR30Q53SZ7 412 aaPredicted RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 B4GALNT4Q76KP1 1039 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 SPC24Q8NBT2 197 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 GALNT6Q8NCL4 622 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 SLC37A2Q8TED4 501 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms