RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 AURKAO14965 403 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 TBX10O75333 385 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 AOC1P19801 751 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 TPSB2P20231 275 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CHMP24386 653 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 BMPR2Q13873 1038 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 TPSAB1Q15661 275 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 MOB2Q70IA6 237 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ADCK2Q7Z695 626 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 OR8K5Q8NH50 307 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ART5Q96L15 291 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 GSG1L2A8MUP6 293 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 EIF1AYO14602 144 aaKnown RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CHRNA5P30532 468 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CDKN2CP42773 168 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 EIF1AXP47813 144 aaKnown RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ALYREFQ86V81 257 aaKnown RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SLC37A3Q8NCC5 494 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SERAC1Q96JX3 654 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 DMRTB1Q96MA1 342 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CCNL1Q9UK58 526 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 PCDHB12Q9Y5F1 795 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 TAF6LQ9Y6J9 622 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ELOVL7A1L3X0 281 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SCGNO76038 276 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 HTR2BP41595 481 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 FAXDC2Q96IV6 333 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 F5H423 210 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ITM2AO43736 263 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 PRKAB2O43741 272 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 PEX11AO75192 247 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SDR16C5Q8N3Y7 309 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ADGRB2O60241 1585 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 RFPL1O75677 317 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 TMEM199Q8N511 208 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 OR5K1Q8NHB7 308 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 USP7Q93009 1102 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CNDP2Q96KP4 475 aaKnown RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ACOX2Q99424 681 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF471Q9BX82 626 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CEP170BQ9Y4F5 1589 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 HSPE1-MOB4S4R3N1 261 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 PRKYO43930 277 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 OR2B3O76000 313 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 USP17L8P0C7I0 530 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 PROZP22891 400 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 QRICH1Q2TAL8 776 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 LINC00299Q6ZSB3 139 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SVBPQ8N300 66 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SLC44A3Q8N4M1 653 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 FAM105AQ9NUU6 356 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ADGRE2Q9UHX3 823 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CDH10Q9Y6N8 788 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 CYP11A1P05108 521 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ANXA8P13928 327 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 RPL9P32969 192 aaKnown RBP12.56□□□□□ -0.4
COL6A3-203ENST00000353578 KLF10Q13118 480 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 FGL2Q14314 439 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 IER5Q5VY09 327 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SMYD5Q6GMV2 418 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 BBS12Q6ZW61 710 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SYT12Q8IV01 421 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SLCO2A1Q92959 643 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 BCL2L14Q9BZR8 327 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 C3orf14Q9HBI5 128 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ST8SIA6P61647 398 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF697Q5TEC3 545 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 SLC22A10Q63ZE4 541 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 LPCAT4Q643R3 524 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 DISP2A7MBM2 1401 aa12.56□□□□□ -0.4
COL6A3-203ENST00000353578 ADAM10O14672 748 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 SNAPINO95295 136 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CD36P16671 472 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 MTAPQ13126 283 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 VSTM1Q6UX27 236 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 RIT1Q92963 219 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CPXM1Q96SM3 734 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 LRRC3Q9BY71 257 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 TREM1Q9NP99 234 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ARID1AO14497 2285 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 SSX4O60224 188 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 RSL1D1O76021 490 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 WDPCPO95876 746 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 CDKL1Q00532 357 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 OR7G2Q8NG99 324 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 GAL3ST1Q99999 423 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 TMEM246Q9BRR3 403 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 RSPH9Q9H1X1 276 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 OIP5O43482 229 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 C6orf222P0C671 652 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 NAGLUP54802 743 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 PPP3R1P63098 170 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 VN1R5Q7Z5H4 357 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 GJB4Q9NTQ9 266 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 NUFIP1Q9UHK0 495 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 ATE1O95260 518 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 MYBP10242 640 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 MTHFD1P11586 935 aaKnown RBP12.55□□□□□ -0.4
COL6A3-203ENST00000353578 SLC11A2P49281 568 aa12.55□□□□□ -0.4
COL6A3-203ENST00000353578 PTGR1Q14914 329 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms