RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 KLHDC10Q6PID8 442 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 CRIPAKQ8N1N5 446 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 MIER2Q8N344 545 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 FUBP1Q96AE4 644 aaKnown RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 ROPN1LQ96C74 230 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 CYP2S1Q96SQ9 504 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 SLC30A3Q99726 388 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 UBAP1Q9NZ09 502 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 PHF24Q9UPV7 400 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 OAS3Q9Y6K5 1087 aaKnown RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 SCN5AQ14524 2016 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 BBIP1A8MTZ0 92 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 BTN3A1O00481 513 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 HOXA2O43364 376 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 OR1I1O60431 355 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 F11P03951 625 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 INHAP05111 366 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 MC4RP32245 332 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 PTPRRQ15256 657 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 PITRM1Q5JRX3 1037 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 THEMIS2Q5TEJ8 643 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 RNF219Q5W0B1 726 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 ANKS6Q68DC2 871 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 LINGO4Q6UY18 593 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 LRCH3Q96II8 777 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 BPIFA1Q9NP55 256 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 PAPOLBQ9NRJ5 636 aaKnown RBP21.66■■□□□ 1.06
SHMT1-202ENST00000352886 MTRRQ9UBK8 725 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 TBC1D30Q9Y2I9 924 aa21.66■■□□□ 1.06
SHMT1-202ENST00000352886 ANKRD66B4E2M5 251 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 C9JVG2 144 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 AP1G1O43747 822 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 PYGLP06737 847 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 HGFP14210 728 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 VPS26BQ4G0F5 336 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 ADGRF1Q5T601 910 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 CHST9Q7L1S5 443 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 SPDYE1Q8NFV5 336 aaPredicted RBP21.65■■□□□ 1.06
SHMT1-202ENST00000352886 RNF217Q8TC41 542 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 OVCA2Q8WZ82 227 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 CNBD2Q96M20 576 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 SEMA6AQ9H2E6 1030 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 IL1RL2Q9HB29 575 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 PCDHGB4Q9UN71 923 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 PCDHGB5Q9Y5G0 923 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.65■■□□□ 1.06
SHMT1-202ENST00000352886 SYCE1LA8MT33 242 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 NIPSNAP2O75323 286 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 CRCPO75575 148 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 HMGA1P17096 107 aaKnown RBP21.65■■□□□ 1.06
SHMT1-202ENST00000352886 LBPP18428 481 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 PSMA3P25788 255 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 ARF5P84085 180 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 ECT2LQ008S8 904 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 MAP7D1Q3KQU3 841 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 NKAPQ8N5F7 415 aaKnown RBP21.65■■□□□ 1.06
SHMT1-202ENST00000352886 SIDT2Q8NBJ9 832 aaKnown RBP21.65■■□□□ 1.06
SHMT1-202ENST00000352886 RIN3Q8TB24 985 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 WBP2Q969T9 261 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 EME1Q96AY2 570 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 ADGRE3Q9BY15 652 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 RNF38Q9H0F5 515 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 MAP10Q9P2G4 905 aa21.65■■□□□ 1.06
SHMT1-202ENST00000352886 A0A0U1RQS6 177 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 TCRBV3S1A0A5B6 114 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 VPS26AO75436 327 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CSPG5O95196 566 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 SEC24AO95486 1093 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 RPS17P08708 135 aaKnown RBP21.64■■□□□ 1.05
SHMT1-202ENST00000352886 PKMP14618 531 aaKnown RBP21.64■■□□□ 1.05
SHMT1-202ENST00000352886 POLE2P56282 527 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 ZRANB3Q5FWF4 1079 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 C6orf52Q5T4I8 152 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CXorf57Q6NSI4 855 aaKnown RBP21.64■■□□□ 1.05
SHMT1-202ENST00000352886 SLC30A9Q6PML9 568 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 ISLR2Q6UXK2 745 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 LRTOMTQ8WZ04 291 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 SLCO4A1Q96BD0 722 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CWH43Q9H720 699 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 HMX1Q9NP08 348 aaPredicted RBP21.64■■□□□ 1.05
SHMT1-202ENST00000352886 TRPM5Q9NZQ8 1165 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 GMPR2Q9P2T1 348 aaKnown RBP21.64■■□□□ 1.05
SHMT1-202ENST00000352886 VPS9D1Q9Y2B5 631 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 TIMM22Q9Y584 194 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 AK5Q9Y6K8 562 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 EME2A4GXA9 379 aaPredicted RBP21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CAPN3P20807 821 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CES1P23141 567 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 TTPAP49638 278 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 AGTR2P50052 363 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CDKL1Q00532 357 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 TRAF2Q12933 501 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 USP41Q3LFD5 358 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 HERC6Q8IVU3 1022 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 FAM126BQ8IXS8 530 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 LRRC43Q8N309 656 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 PXYLP1Q8TE99 480 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 HHIPL1Q96JK4 782 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 CEP295NLQ96MC4 621 aa21.64■■□□□ 1.05
SHMT1-202ENST00000352886 HACD3Q9P035 362 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms