RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PDPK2PQ6A1A2 396 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 DBX2Q6ZNG2 339 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 SLC25A45Q8N413 288 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 EID2Q8N6I1 236 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PTCD2Q8WV60 388 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 RUNDC3BQ96NL0 473 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CARS2Q9HA77 564 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ARFGAP3Q9NP61 516 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 ASIC3Q9UHC3 531 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 PCOLCE2Q9UKZ9 415 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 OAS3Q9Y6K5 1087 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 DGKBQ9Y6T7 804 aa15.78■□□□□ 0.12
CCDC28A-201ENST00000332797 CCDC78A2IDD5 438 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 CCL22O00626 93 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 GPR39O43194 453 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 SLC25A14O95258 325 aaPredicted RBP15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 CSRP1P21291 193 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 PTGIRP43119 386 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 GNPDA1P46926 289 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 NOVA1P51513 510 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 SESN2P58004 480 aaPredicted RBP15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 PTK6Q13882 451 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 ANKRD22Q5VYY1 191 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 MARK2Q7KZI7 788 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 PHYKPLQ8IUZ5 450 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 CPT1BQ92523 772 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 SLCO2A1Q92959 643 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 GLYATL1Q969I3 302 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 DNAJC1Q96KC8 554 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 KRT12Q99456 494 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 SUFUQ9UMX1 484 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 SLC17A4Q9Y2C5 497 aa15.77■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNF106Q9H2Y7 1883 aaKnown RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 TDRD6O60522 2096 aaKnown RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 GAPDHSO14556 408 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 URI1O94763 535 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 PRAMEF1O95521 474 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 CELA2BP08218 269 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 ADCY8P40145 1251 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 HADHAP40939 763 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 MAGEA6P43360 314 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 CDK16Q00536 496 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 ITGA9Q13797 1035 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 ELOCQ15369 112 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNF648Q5T619 568 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 PSAPL1Q6NUJ1 521 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 GDAP1Q8TB36 358 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 TBATAQ96M53 351 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 VPS35Q96QK1 796 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 CLPBQ9H078 707 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 NLE1Q9NVX2 485 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 APPL1Q9UKG1 709 aa15.76■□□□□ 0.11
CCDC28A-201ENST00000332797 SPTBN4Q9H254 2564 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 HEATR9A2RTY3 570 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 NEMP2A6NFY4 417 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 KIF2AO00139 706 aaPredicted RBP15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 AP3B1O00203 1094 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 GIPC1O14908 333 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 TTI1O43156 1089 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A9O60656 530 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 CBFA2T3O75081 653 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 MTX2O75431 263 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 TMEM63AO94886 807 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 KCNK5O95279 499 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 FUCA1P04066 466 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 IVLP07476 585 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 ALPPL2P10696 532 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A6P19224 532 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A1P22309 533 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A4P22310 534 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A3P35503 534 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A5P35504 534 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 SARNPP82979 210 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 C2orf54Q08AI8 447 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 LAMB3Q13751 1172 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 DEFB133Q30KQ1 61 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 LRRC8BQ6P9F7 803 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 SYDE1Q6ZW31 735 aaPredicted RBP15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNF534Q76KX8 674 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 JAMLQ86YT9 394 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 FSTL5Q8N475 847 aaPredicted RBP15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 SPATA4Q8NEY3 305 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 PPHLN1Q8NEY8 458 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 OR4C6Q8NH72 309 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 BAHD1Q8TBE0 780 aaPredicted RBP15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 DTX3LQ8TDB6 740 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 STYXQ8WUJ0 223 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 RANBP9Q96S59 729 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 TRIM51Q9BSJ1 452 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 TMEM168Q9H0V1 697 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 OR2AG1Q9H205 316 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A7Q9HAW7 530 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A10Q9HAW8 530 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 UGT1A8Q9HAW9 530 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 VPS18Q9P253 973 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 FTSJ1Q9UET6 329 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 TMPRSS11EQ9UL52 423 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 DOLKQ9UPQ8 538 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 TCAF1Q9Y4C2 921 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 GPSM3Q9Y4H4 160 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms