RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ETNK1Q9HBU6 452 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 TRIM39Q9HCM9 518 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 VPS18Q9P253 973 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 SUFUQ9UMX1 484 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 GPR34Q9UPC5 381 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 GPSM3Q9Y4H4 160 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 FADS2P1A8MWK0 482 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 USP12O75317 370 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 RFPL3O75679 317 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 GAS8O95995 478 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 FUCA1P04066 466 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 SPAM1P38567 509 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 ACADVLP49748 655 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 GNG11P61952 73 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 SHC2P98077 582 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 ILF3Q12906 894 aaKnown RBP eCLIP13.9□□□□□ -0.18
LIMS1-201ENST00000332345 OLIG2Q13516 323 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 NR0B2Q15466 257 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 KCTD16Q68DU8 428 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 NYAP1Q6ZVC0 841 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 TRIM74Q86UV6 250 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 TAB3Q8N5C8 712 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-201ENST00000332345 FAM46DQ8NEK8 389 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 ACTRT1Q8TDG2 376 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 GPBAR1Q8TDU6 330 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 GLYATL1Q969I3 302 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 MS4A14Q96JA4 679 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 C19orf43Q9BQ61 176 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 GSDMCQ9BYG8 508 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 SUDS3Q9H7L9 328 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-201ENST00000332345 IL26Q9NPH9 171 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 RAB6BQ9NRW1 208 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 GULP1Q9UBP9 304 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 ZNHIT2Q9UHR6 403 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 PYCARDQ9ULZ3 195 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 SNX12Q9UMY4 172 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 ARL5AQ9Y689 179 aa13.9□□□□□ -0.18
LIMS1-201ENST00000332345 ARHGEF17Q96PE2 2063 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-201ENST00000332345 USP27XA6NNY8 438 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 GPR89AB7ZAQ6 455 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 PGRMC1O00264 195 aaKnown RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 HYAL3O43820 417 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 GP1BAP07359 652 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 CELA2BP08218 269 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 GPR89BP0CG08 455 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 ETS1P14921 441 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 TCP1P17987 556 aaKnown RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 RPL22P35268 128 aaKnown RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 ADCY8P40145 1251 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 HADHAP40939 763 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 KCNJ1P48048 391 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 ITGA9Q13797 1035 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 TCEA2Q15560 299 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 PYCR3Q53H96 274 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 MARK2Q7KZI7 788 aaKnown RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 GALNT13Q8IUC8 556 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 PHYKPLQ8IUZ5 450 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 GALNT15Q8N3T1 639 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 ARL10Q8N8L6 244 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 PRELID2Q8N945 189 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 DNAAF3Q8N9W5 541 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 OR4K2Q8NGD2 314 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 OR6C4Q8NGE1 309 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 MAGOHBQ96A72 148 aaKnown RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 VPS35Q96QK1 796 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 SCNM1Q9BWG6 230 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 DPEP2Q9H4A9 486 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 APPL1Q9UKG1 709 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 OAS3Q9Y6K5 1087 aaKnown RBP13.89□□□□□ -0.19
LIMS1-201ENST00000332345 SPEGQ15772 3267 aa13.89□□□□□ -0.19
LIMS1-201ENST00000332345 NCOR2Q9Y618 2525 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 GLYATL1P3A0A0U1RQE8 302 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 CPED1A4D0V7 1026 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 EME2A4GXA9 379 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-201ENST00000332345 BUD23O43709 281 aaKnown RBP13.88□□□□□ -0.19
LIMS1-201ENST00000332345 VEGFDO43915 354 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 NUAK1O60285 661 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 SUN1O94901 812 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 ZSCAN5DPP0CG00 497 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 TPH1P17752 444 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 CTBSQ01459 385 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 MSLNQ13421 630 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-201ENST00000332345 SEMA5AQ13591 1074 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 LAMB3Q13751 1172 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 LRP8Q14114 963 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 CHRNA6Q15825 494 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 ATP13A5Q4VNC0 1218 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 OGFOD3Q6PK18 319 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 DHRS13Q6UX07 377 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 FAM151BQ6UXP7 276 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 PPP1R21Q6ZMI0 780 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 TMPRSS12Q86WS5 348 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 GDAP1Q8TB36 358 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 COG1Q8WTW3 980 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 NAT6Q93015 286 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 TTC25Q96NG3 672 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 OR2M4Q96R27 311 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 AP1M1Q9BXS5 423 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 ABCG4Q9H172 646 aa13.88□□□□□ -0.19
LIMS1-201ENST00000332345 SIRPGQ9P1W8 387 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms