RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CD86P42081 329 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SPIBQ01892 262 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SP3Q02447 781 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 IKBKEQ14164 716 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 HECTD3Q5T447 861 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 LCN1P1Q5VSP4 162 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 REP15Q6BDI9 236 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 OGFOD2Q6N063 350 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 TMPRSS11AQ6ZMR5 421 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SLC34A3Q8N130 599 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 SPATA6LQ8N4H0 392 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 MED8Q96G25 268 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 B3GNT5Q9BYG0 378 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ZFP14Q9HCL3 533 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ZNF214Q9UL59 606 aaPredicted RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 SOWAHBA6NEL2 793 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PAPSS1O43252 624 aaPredicted RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 PEX10O60683 326 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 FTH1P02794 183 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 UGT2B15P54855 530 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 STARD3Q14849 445 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 HKDC1Q2TB90 917 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 NIPAL1Q6NVV3 410 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 C16orf59Q7L2K0 433 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 APTXQ7Z2E3 356 aaKnown RBP11.47□□□□□ -0.57
VPS39-201ENST00000318006 CYP4X1Q8N118 509 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 MEIOBQ8N635 442 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 MOSPD2Q8NHP6 518 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 DMRTB1Q96MA1 342 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 PDZD7Q9H5P4 517 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 ANGPT4Q9Y264 503 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 LYVE1Q9Y5Y7 322 aa11.47□□□□□ -0.57
VPS39-201ENST00000318006 TOR1BO14657 336 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 LINGO3P0C6S8 592 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 MAGEA8P43361 318 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 AIF1P55008 147 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ATP6V0D1P61421 351 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 CTBP1Q13363 440 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 CRY1Q16526 586 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ZNF829Q3KNS6 432 aaPredicted RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 ENDOVQ8N8Q3 282 aaKnown RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 SMYD1Q8NB12 490 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 PIH1D2Q8WWB5 315 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ITCHQ96J02 903 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 C12orf4Q9NQ89 552 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 AASDHPPTQ9NRN7 309 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ARL15Q9NXU5 204 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 PPM1HQ9ULR3 514 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 GSAPA4D1B5 854 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ARHGEF33A8MVX0 844 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 GPR25O00155 361 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 SLC22A2O15244 555 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 TULP3O75386 442 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 LRCH4O75427 683 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 CDH13P55290 713 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 OR2B6P58173 313 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 BNIP3Q12983 259 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 LSM12Q3MHD2 195 aaKnown RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 ARL13AQ5H913 290 aaPredicted RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 ANKS1BQ7Z6G8 1248 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 LRRN4Q8WUT4 740 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 ROPN1LQ96C74 230 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 MTFMTQ96DP5 389 aaKnown RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 DNMT3LQ9UJW3 386 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 NOCTQ9UK39 431 aaKnown RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 SNED1Q8TER0 1413 aa11.46□□□□□ -0.57
VPS39-201ENST00000318006 PHRF1Q9P1Y6 1649 aaKnown RBP11.46□□□□□ -0.57
VPS39-201ENST00000318006 ZNF99A8MXY4 864 aaPredicted RBP11.46□□□□□ -0.58
VPS39-201ENST00000318006 SUV39H1O43463 412 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 OTCP00480 354 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 PRKAR2AP13861 404 aaKnown RBP11.46□□□□□ -0.58
VPS39-201ENST00000318006 CTSKP43235 329 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 SLC18A1P54219 525 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 LIPEQ05469 1076 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 IL18Q14116 193 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 CYP1B1Q16678 543 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 GALNT5Q7Z7M9 940 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 C1GALT1C1Q96EU7 318 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 OR52E6Q96RD3 313 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 CHCHD6Q9BRQ6 235 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 C2orf49Q9BVC5 232 aaPredicted RBP11.46□□□□□ -0.58
VPS39-201ENST00000318006 GSDMCQ9BYG8 508 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.46□□□□□ -0.58
VPS39-201ENST00000318006 PRDM8Q9NQV8 689 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 SLC22A1O15245 554 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 ANXA5P08758 320 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 HADHBP55084 474 aaKnown RBP11.46□□□□□ -0.58
VPS39-201ENST00000318006 TUSC3Q13454 348 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 SLC35G1Q2M3R5 365 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 CNSTQ6PJW8 725 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 AHSA2Q719I0 299 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 TAF8Q7Z7C8 310 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 CD101Q93033 1021 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 HIPK3Q9H422 1215 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 GOLGA2P5Q9HBQ8 144 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 SIX2Q9NPC8 291 aa11.46□□□□□ -0.58
VPS39-201ENST00000318006 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.46□□□□□ -0.58
VPS39-201ENST00000318006 AKAP7Q9P0M2 348 aaPredicted RBP11.46□□□□□ -0.58
VPS39-201ENST00000318006 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms