RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 IYDQ6PHW0 289 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 LYSMD3Q7Z3D4 306 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 ATCAYQ86WG3 371 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 ZNF761Q86XN6 746 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 TP53INP2Q8IXH6 220 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 SCAMP4Q969E2 229 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 CSPG4P5Q96PW8 444 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 POLR1EQ9GZS1 481 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 NT5MQ9NPB1 228 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 CNOT8Q9UFF9 292 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 AMACRQ9UHK6 382 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 CD84Q9UIB8 345 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 UTP20O75691 2785 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 TRBV23OR9-2A0A075B6M9 112 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 A0A0J9YYE9 177 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 LILRA5A6NI73 299 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 MKRN2OSH3BPM6 223 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 FZD6O60353 706 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 DLGAP3O95886 979 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 TRBC1P01850 177 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 FTLP02792 175 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 ANKRD34CP0C6C1 535 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 AMPD1P23109 780 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 OAS2P29728 719 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 RPL26P61254 145 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 NFATC2Q13469 925 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 RBM43Q6ZSC3 357 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 CHST15Q7LFX5 561 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 TIPARPQ7Z3E1 657 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 TRIM74Q86UV6 250 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 TEX26Q8N6G2 289 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 TEKT4Q8WW24 435 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 ZNF653Q96CK0 615 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 CTRCQ99895 268 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 RIOK2Q9BVS4 552 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 TRIM7Q9C029 511 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 UCK1Q9HA47 277 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 ETNK2Q9NVF9 386 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 ANO10Q9NW15 660 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 RPL26L1Q9UNX3 145 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 MAN2B2Q9Y2E5 1009 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 RPS6KL1Q9Y6S9 549 aa14.64□□□□□ -0.07
CCDC88B-201ENST00000301897 PRR19A6NJB7 356 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 INPP4BO15327 924 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 DNAJC6O75061 913 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 PDHA1P08559 390 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 F3P13726 295 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 ITKQ08881 620 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 ALG1LQ6GMV1 187 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 RFLNAQ6ZTI6 216 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 PHYKPLQ8IUZ5 450 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 UNC5BQ8IZJ1 945 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 HSPH1Q92598 858 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 RCOR3Q9P2K3 495 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 CPNE7Q9UBL6 633 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 TBC1D29Q9UFV1 150 aa14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 MN1Q10571 1320 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-201ENST00000301897 ICE1Q9Y2F5 2266 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 RGSL1A5PLK6 1076 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 A6NCN8 305 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 TOX3O15405 576 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 EML2O95834 649 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 IL1R2P27930 398 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 MAPK9P45984 424 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 CD97P48960 835 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 CLCNKAP51800 687 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 PIGHQ14442 188 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 PTPRRQ15256 657 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 ASIC2Q16515 512 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 SMTNL2Q2TAL5 461 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 TIGD7Q6NT04 549 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 TCTN3Q6NUS6 607 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 C16orf46Q6P387 395 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 CYB5D1Q6P9G0 228 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 SASS6Q6UVJ0 657 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 APTXQ7Z2E3 356 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 LURAP1LQ8IV03 231 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 TEX19Q8NA77 164 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 CCHCR1Q8TD31 782 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 FATE1Q969F0 183 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 MIB2Q96AX9 1013 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 LYSMD1Q96S90 227 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 ULBP3Q9BZM4 244 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 APMAPQ9HDC9 416 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 LMBRD1Q9NUN5 540 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 KCND3Q9UK17 655 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 POLHQ9Y253 713 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 KCNMB2Q9Y691 235 aa14.62□□□□□ -0.07
CCDC88B-201ENST00000301897 GPR89AB7ZAQ6 455 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 SNX2O60749 519 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 RECKO95980 971 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 ATP1A1P05023 1023 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 GPR89BP0CG08 455 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 RARAP10276 462 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 PRKCIP41743 596 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 ZNF165P49910 485 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 IL11RAQ14626 422 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 STX1AQ16623 288 aa14.61□□□□□ -0.07
CCDC88B-201ENST00000301897 HENMT1Q5T8I9 393 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms