RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SLAIN1Q8ND83 568 aa19.96■□□□□ 0.79
VPS53-201ENST00000291074 ATP6V1E2Q96A05 226 aa19.96■□□□□ 0.79
VPS53-201ENST00000291074 FUBP1Q96AE4 644 aaKnown RBP19.96■□□□□ 0.79
VPS53-201ENST00000291074 ASB9Q96DX5 294 aa19.96■□□□□ 0.79
VPS53-201ENST00000291074 TIMM22Q9Y584 194 aa19.96■□□□□ 0.79
VPS53-201ENST00000291074 TANC1Q9C0D5 1861 aa19.96■□□□□ 0.79
VPS53-201ENST00000291074 NR5A2O00482 541 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 TRIM24O15164 1050 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 PRAMEF12O95522 483 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 FGF4P08620 206 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 PRDX3P30048 256 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 STX1BP61266 288 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 ATXN7L2Q5T6C5 722 aaPredicted RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 PHYKPLQ8IUZ5 450 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 ZNF461Q8TAF7 563 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 LRCH3Q96II8 777 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 BCAP29Q9UHQ4 241 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 TSR3Q9UJK0 312 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 SARDHQ9UL12 918 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 FCF1Q9Y324 198 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 OAS3Q9Y6K5 1087 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 AK5Q9Y6K8 562 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 TBL1XO60907 577 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 RNASEH2AO75792 299 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 TWF1Q12792 350 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 TRIM25Q14258 630 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 IL23RQ5VWK5 629 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 ISLR2Q6UXK2 745 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 IL1RL2Q9HB29 575 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 SARS2Q9NP81 518 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 SPAG4Q9NPE6 437 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 SUCOQ9UBS9 1254 aaKnown RBP19.95■□□□□ 0.78
VPS53-201ENST00000291074 POLG2Q9UHN1 485 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 ASB3Q9Y575 518 aa19.95■□□□□ 0.78
VPS53-201ENST00000291074 IQCF5A8MTL0 148 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 STX7O15400 261 aaKnown RBP19.94■□□□□ 0.78
VPS53-201ENST00000291074 PKMP14618 531 aaKnown RBP19.94■□□□□ 0.78
VPS53-201ENST00000291074 DEFB115Q30KQ5 88 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 RARS2Q5T160 578 aaKnown RBP19.94■□□□□ 0.78
VPS53-201ENST00000291074 CYP2R1Q6VVX0 501 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 RNF168Q8IYW5 571 aaPredicted RBP19.94■□□□□ 0.78
VPS53-201ENST00000291074 WFDC5Q8TCV5 224 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 DLG3Q92796 817 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 TUBGCP3Q96CW5 907 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 PIDD1Q9HB75 910 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 LHX3Q9UBR4 397 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 PLXNA4Q9HCM2 1894 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 A0A0J9YYE9 177 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 H0Y626 953 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 TSPAN12O95859 305 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 LCP2Q13094 533 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 TLR1Q15399 786 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 UGT3A1Q6NUS8 523 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 TTC30BQ8N4P2 665 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 EEF1AKMT1Q8WVE0 214 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 AUTS2Q8WXX7 1259 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 CCDC97Q96F63 343 aaPredicted RBP19.94■□□□□ 0.78
VPS53-201ENST00000291074 MYRFLQ96LU7 910 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 ASB2Q96Q27 587 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 TCF12Q99081 682 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 ADGRE3Q9BY15 652 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 HIPK3Q9H422 1215 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 CROTQ9UKG9 612 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 ASB1Q9Y576 335 aa19.94■□□□□ 0.78
VPS53-201ENST00000291074 ABLIM3O94929 683 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 MBL2P11226 248 aaPredicted RBP19.93■□□□□ 0.78
VPS53-201ENST00000291074 CTPS1P17812 591 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 PSMD8P48556 350 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 SLC7A2P52569 658 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 SMAD3P84022 425 aaKnown RBP19.93■□□□□ 0.78
VPS53-201ENST00000291074 PDK3Q15120 406 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 CPNE9Q8IYJ1 553 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 OR6K2Q8NGY2 324 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 RETREG1Q9H6L5 497 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 MRGBPQ9NV56 204 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 PDP2Q9P2J9 529 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 PCDHB9Q9Y5E1 797 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 ATP4BP51164 291 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 ATP6V0D1P61421 351 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 ILF2Q12905 390 aaKnown RBP19.93■□□□□ 0.78
VPS53-201ENST00000291074 NCEH1Q6PIU2 408 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 DCBLD1Q8N8Z6 715 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 CD200R1Q8TD46 325 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 LINGO1Q96FE5 620 aa19.93■□□□□ 0.78
VPS53-201ENST00000291074 ZFRQ96KR1 1074 aaKnown RBP19.93■□□□□ 0.78
VPS53-201ENST00000291074 TRMT6Q9UJA5 497 aaKnown RBP19.93■□□□□ 0.78
VPS53-201ENST00000291074 K7ERQ8 282 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 VPS26AO75436 327 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 RPS17P08708 135 aaKnown RBP19.92■□□□□ 0.78
VPS53-201ENST00000291074 HGFP14210 728 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 CAPN3P20807 821 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 ACADVLP49748 655 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 CCNHP51946 323 aaPredicted RBP19.92■□□□□ 0.78
VPS53-201ENST00000291074 HK3P52790 923 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 ZXDBP98169 803 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 VPS26BQ4G0F5 336 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 C6orf10Q5SRN2 563 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 SPOUT1Q5T280 376 aaKnown RBP19.92■□□□□ 0.78
VPS53-201ENST00000291074 ANKS6Q68DC2 871 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 FAM117BQ6P1L5 589 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms