RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 XAGE5Q8WWM1 108 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 MRPL57Q9BQC6 102 aaKnown RBP11.34□□□□□ -0.59
PTPN4-201ENST00000263708 SP140LQ9H930 580 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 NPR2P20594 1047 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 RBL1P28749 1068 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 RPP38P78345 283 aaKnown RBP11.34□□□□□ -0.59
PTPN4-201ENST00000263708 PPATQ06203 517 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 LCN1P1Q5VSP4 162 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 GPR65Q8IYL9 337 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 PCDH19Q8TAB3 1148 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 SLC22A8Q8TCC7 542 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 EXOSC8Q96B26 276 aaKnown RBP11.34□□□□□ -0.59
PTPN4-201ENST00000263708 DHRS12A0PJE2 317 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 VSTM5A8MXK1 200 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 RLN2P04090 185 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 MIPP30301 263 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 CDK9P50750 372 aaKnown RBP11.34□□□□□ -0.59
PTPN4-201ENST00000263708 PTPRNQ16849 979 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 RBM44Q6ZP01 1051 aaKnown RBP11.34□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF571Q7Z3V5 609 aaPredicted RBP11.34□□□□□ -0.59
PTPN4-201ENST00000263708 GHDCQ8N2G8 530 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 ZMIZ2Q8NF64 920 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 ACER1Q8TDN7 264 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 C8orf48Q96LL4 319 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 ARHGAP9Q9BRR9 750 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 KCNK4Q9NYG8 393 aa11.34□□□□□ -0.59
PTPN4-201ENST00000263708 LINGO3P0C6S8 592 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 PRLRP16471 622 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 KELP23276 732 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 BNIP1Q12981 228 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 SEMA5AQ13591 1074 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 WSCD1Q658N2 575 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 PLET1Q6UQ28 207 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 NET1Q7Z628 596 aaPredicted RBP11.33□□□□□ -0.59
PTPN4-201ENST00000263708 KCT2Q8NC54 265 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 ULBP1Q9BZM6 244 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF221Q9UK13 617 aa11.33□□□□□ -0.59
PTPN4-201ENST00000263708 NDRG2Q9UN36 371 aaKnown RBP11.33□□□□□ -0.59
PTPN4-201ENST00000263708 GNB5O14775 395 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 NOL4O94818 638 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 COX4I1P13073 169 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 DPYSL3Q14195 570 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 HDDC3Q8N4P3 179 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 REPS2Q8NFH8 660 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 OR4C6Q8NH72 309 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 BORCS8Q96FH0 119 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SENP8Q96LD8 212 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 USP42Q9H9J4 1324 aaKnown RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 PTENP60484 403 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SLC25A3Q00325 362 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 LRP8Q14114 963 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 TYSND1Q2T9J0 566 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 KLHL26Q53HC5 615 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 MSANTD2Q6P1R3 559 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM86AQ8N2M4 240 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 MCFD2Q8NI22 146 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ZCCHC10Q8TBK6 192 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SLC38A3Q99624 504 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 TCF25Q9BQ70 676 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 GLS2Q9UI32 602 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF490Q9ULM2 529 aaPredicted RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ALOX5P09917 674 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 RAB10P61026 200 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 DEFA5Q01523 94 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF268Q14587 947 aaPredicted RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 CARTPTQ16568 116 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 PARP6Q2NL67 630 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SLC9B1Q4ZJI4 515 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 IQSEC1Q6DN90 963 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 RPH3AQ9Y2J0 694 aaPredicted RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 R3HDM2Q9Y2K5 976 aaKnown RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 CAPN6Q9Y6Q1 641 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 PPEF2O14830 753 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 CCL16O15467 120 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 IDO1P14902 403 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 MC4RP32245 332 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 TTKP33981 857 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ADAMTSL2Q86TH1 951 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 DNERQ8NFT8 737 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 OR52J3Q8NH60 311 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ZNF606Q8WXB4 792 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 LGR4Q9BXB1 951 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 FBXW2Q9UKT8 454 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 H3BUI4 141 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ATG13O75143 517 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 GJB6O95452 261 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 LHCGRP22888 699 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SEPHS1P49903 392 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 MAXP61244 160 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 GRB10Q13322 594 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 TRIM43Q96BQ3 446 aaPredicted RBP11.33□□□□□ -0.6
PTPN4-201ENST00000263708 RIPOR3Q96MK2 946 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 KCNIP3Q9Y2W7 256 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 UGT2B11O75310 529 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 ASMTP46597 345 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 CCL23P55773 120 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 AMZ1Q400G9 498 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 SEMA3CQ99985 751 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 CCDC28BQ9BUN5 200 aa11.33□□□□□ -0.6
PTPN4-201ENST00000263708 WRAP53Q9BUR4 548 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms