RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GADD45AP24522 165 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 PSEN1P49768 467 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 EIPR1Q53HC9 387 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 DPF2Q92785 391 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CELF6Q96J87 481 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ACAT2Q9BWD1 397 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 B3GNT4Q9C0J1 378 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CALML5Q9NZT1 146 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 TSPAN16Q9UKR8 245 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 RAP2CQ9Y3L5 183 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 AP4B1Q9Y6B7 739 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 HYKKA2RU49 373 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 RELL1Q8IUW5 271 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 MARK4Q96L34 752 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ZNRF3Q9ULT6 936 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 TSPAN3O60637 253 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 UROSP10746 265 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 PARP8Q8N3A8 854 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 PNPT1Q8TCS8 783 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 TTC37Q6PGP7 1564 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CYP3A7-CYP3A51PA0A087WV96 503 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 CYP3A7P24462 503 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 TPGS1Q6ZTW0 290 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 GALNT6Q8NCL4 622 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 ZSWIM2Q8NEG5 633 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 KCTD4Q8WVF5 259 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 RHBDF1Q96CC6 855 aa13.88□□□□□ -0.19
CCDC88A-201ENST00000263630 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 FABP12A6NFH5 140 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 CASTOR2A6NHX0 329 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 FFAR3O14843 346 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 GPR42O15529 346 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 C22orf31O95567 290 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 EPCAMP16422 314 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 C16orf86Q6ZW13 317 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 YTHDF3Q7Z739 585 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 DPF3Q92784 378 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 MROH8Q9H579 483 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 RNF121Q9H920 327 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 TULP3O75386 442 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 IFNA4P05014 189 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 CD247P20963 164 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 SLC6A4P31645 630 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 MAP3K8P41279 467 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ARFRP1Q13795 201 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 TSGA10IPQ3SY00 556 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 HAGHLQ6PII5 290 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ZCCHC23Q6ZST2 131 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 RBFAQ8N0V3 343 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 SUN3Q8TAQ9 357 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 EDEM1Q92611 657 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 NYAP2Q9P242 653 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 RBMX2Q9Y388 322 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 APOC4-APOC2K7ER74 178 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 KCNK1O00180 336 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 IFNA10P01566 189 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 APOC2P02655 101 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 FABP3P05413 133 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 SSTR1P30872 391 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ATP5C1P36542 298 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 FASTKD3Q14CZ7 662 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 POF1BQ8WVV4 589 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 TXN2Q99757 166 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 POPDC2Q9HBU9 364 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 BORCS7-ASMTA0A0B4J1R7 106 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 GRXCR2A6NFK2 248 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 RPL6Q02878 288 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ORC1Q13415 861 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 GRK1Q15835 563 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 EGFLAMQ63HQ2 1017 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 PGM2L1Q6PCE3 622 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 BORCS7Q96B45 105 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 NXNL1Q96CM4 212 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ELAC1Q9H777 363 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ARPC2O15144 300 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 TGDSO95455 350 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 DNAAF5Q86Y56 855 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ZKSCAN4Q969J2 545 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 AIREO43918 545 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 FIGNQ5HY92 759 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 TMEM86AQ8N2M4 240 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ZSCAN4Q8NAM6 433 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 ADCY4Q8NFM4 1077 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 BORCS8Q96FH0 119 aa13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 CNDP2Q96KP4 475 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 PDP1Q9P0J1 537 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-201ENST00000263630 PCDHGA12O60330 932 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 THEGLP0DJG4 465 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PGDP52209 483 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 CSTF1Q05048 431 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PCDHB16Q9NRJ7 776 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 FPGTO14772 594 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 FAM171A1Q5VUB5 890 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 C3orf33Q6P1S2 294 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 STARD7Q9NQZ5 370 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PCDHGC3Q9UN70 934 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 TRBC1P01850 177 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 PFKPQ01813 784 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 LAPTM5Q13571 262 aa13.86□□□□□ -0.19
CCDC88A-201ENST00000263630 C17orf64Q86WR6 236 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms