RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 ADAMTSL2Q86TH1 951 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 TOX2Q96NM4 488 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 PCDHB18PQ96TA0 734 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 KCNK6Q9Y257 313 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 LRRC38Q5VT99 294 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 CRTC1Q6UUV9 634 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 TMEM132CQ8N3T6 1108 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 CLP1Q92989 425 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 MCMBPQ9BTE3 642 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 VPS45Q9NRW7 570 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 DMTF1Q9Y222 760 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 LIASO43766 372 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 VNN1O95497 513 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 NRLP54845 237 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 DDI2Q5TDH0 399 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 NDC1Q9BTX1 674 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 RC3H2Q9HBD1 1191 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 HCFC1R1Q9NWW0 138 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 IMPAD1Q9NX62 359 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 ZSCAN32Q9NX65 697 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 MRTO4Q9UKD2 239 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 NQO1P15559 274 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 MMP8P22894 467 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 GBE1Q04446 702 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 MADCAM1Q13477 382 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 CCDC153Q494R4 210 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 FGD3Q5JSP0 725 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 ARHGAP17Q68EM7 881 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 PACS1Q6VY07 963 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 PNO1Q9NRX1 252 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 MRGBPQ9NV56 204 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 GNEQ9Y223 722 aaKnown RBP13.68□□□□□ -0.22
SIX4-201ENST00000216513 GRIN2DO15399 1336 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 H3BNH8 94 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 TSC22D2O75157 780 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 CCNCP24863 283 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 ELOCQ15369 112 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 HECTD2Q5U5R9 776 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.68□□□□□ -0.22
SIX4-201ENST00000216513 ATAD3AQ9NVI7 634 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 HCN2Q9UL51 889 aa13.68□□□□□ -0.22
SIX4-201ENST00000216513 TMEM191CA6NGB0 347 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 NELFEP18615 380 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 HOXC12P31275 282 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CDCA2Q69YH5 1023 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 RUBCNQ92622 972 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 FKBPLQ9UIM3 349 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 GPR34Q9UPC5 381 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 TELO2Q9Y4R8 837 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 LRATO95237 230 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 KCNJ5P48544 419 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CYP4F3Q08477 520 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 SCUBE1Q8IWY4 988 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 FAM20CQ8IXL6 584 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CDYL2Q8N8U2 506 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 UTP15Q8TED0 518 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 MAGEB18Q96M61 343 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 NELL2Q99435 816 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.67□□□□□ -0.22
SIX4-201ENST00000216513 CCDC177Q9NQR7 707 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 POLR3BQ9NW08 1133 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 ARIH1Q9Y4X5 557 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 TCF3P15923 654 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CCNHP51946 323 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 ZNF155Q12901 538 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 MYLK3Q32MK0 819 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 PITRM1Q5JRX3 1037 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CLLU1OSQ5K130 101 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 PAPD7Q5XG87 772 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 SLC9B2Q86UD5 537 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 NTPCRQ9BSD7 190 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 ADI1Q9BV57 179 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 FZD10Q9ULW2 581 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 SIT1Q9Y3P8 196 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 MATN3O15232 486 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 DCXO43602 365 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 OXTRP30559 389 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 HTR7P34969 479 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 ZNF844Q08AG5 666 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 DHCR24Q15392 516 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 DNAL1Q4LDG9 190 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 MYLK2Q9H1R3 596 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 MRPS30Q9NP92 439 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 KCNK4Q9NYG8 393 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 ATXN2Q99700 1313 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 CCDC154A6NI56 674 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 PAK4O96013 591 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 NRF1Q16656 503 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 TTMPQ5BVD1 217 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 KDM7AQ6ZMT4 941 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 ZC3H7AQ8IWR0 971 aaKnown RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 PYDC1Q8WXC3 89 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 FOXJ1Q92949 421 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 VIPAS39Q9H9C1 493 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 CYLDQ9NQC7 956 aa13.67□□□□□ -0.22
SIX4-201ENST00000216513 HEMK1Q9Y5R4 338 aaPredicted RBP13.67□□□□□ -0.22
SIX4-201ENST00000216513 LDB2O43679 373 aa13.66□□□□□ -0.22
SIX4-201ENST00000216513 DLDP09622 509 aaKnown RBP13.66□□□□□ -0.22
SIX4-201ENST00000216513 CLK1P49759 484 aaKnown RBP13.66□□□□□ -0.22
SIX4-201ENST00000216513 PLEKHG4Q58EX7 1191 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms