RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ATOH8Q96SQ7 321 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 ERVK-6Q9BXR3 956 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 NUF2Q9BZD4 464 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 GSTO2Q9H4Y5 243 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 DENND2DQ9H6A0 471 aaPredicted RBP21.96■■□□□ 1.11
PNKP-220ENST00000627232 TDP1Q9NUW8 608 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 GTSE1Q9NYZ3 720 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 TBC1D14Q9P2M4 693 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 MTF2Q9Y483 593 aaPredicted RBP21.96■■□□□ 1.11
PNKP-220ENST00000627232 KERAO60938 352 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 ESR1P03372 595 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 POU2F2P09086 479 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 PPARGP37231 505 aaPredicted RBP21.96■■□□□ 1.11
PNKP-220ENST00000627232 DMC1Q14565 340 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 PTPRRQ15256 657 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 DGKKQ5KSL6 1271 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 CTSL3PQ5NE16 218 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SPNS2Q8IVW8 549 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 STAG3L4Q8TBR4 150 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 EID2BQ96D98 161 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 PHF21BQ96EK2 531 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 GPR21Q99679 349 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SHCBP1LQ9BZQ2 653 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 CEP44Q9C0F1 390 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 WDR55Q9H6Y2 383 aaPredicted RBP21.96■■□□□ 1.11
PNKP-220ENST00000627232 ZFYVE1Q9HBF4 777 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 CD248Q9HCU0 757 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 SLC25A13Q9UJS0 675 aa21.96■■□□□ 1.11
PNKP-220ENST00000627232 CAPN8A6NHC0 703 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 DCXO43602 365 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 PRAMEF12O95522 483 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 LMNAP02545 664 aaKnown RBP21.95■■□□□ 1.1
PNKP-220ENST00000627232 RB1P06400 928 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 ALPIP09923 528 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 HNRNPLP14866 589 aaKnown RBP eCLIP21.95■■□□□ 1.1
PNKP-220ENST00000627232 HLA-FP30511 346 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 NAA20P61599 178 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 MXRA7P84157 204 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 OR4D1Q15615 310 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 UNC50Q53HI1 259 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 PRSS36Q5K4E3 855 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 UGT3A1Q6NUS8 523 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 TAS2R42Q7RTR8 314 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 CUZD1Q86UP6 607 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 OR6K2Q8NGY2 324 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 GRIN3AQ8TCU5 1115 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 KCNJ9Q92806 393 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 LYSMD1Q96S90 227 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 P2RY12Q9H244 342 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 MTIF3Q9H2K0 278 aaKnown RBP21.95■■□□□ 1.1
PNKP-220ENST00000627232 ZNF385DQ9H6B1 395 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 TRMT6Q9UJA5 497 aaKnown RBP21.95■■□□□ 1.1
PNKP-220ENST00000627232 TMCO1Q9UM00 188 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 FAM50BQ9Y247 325 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 PCDHB1Q9Y5F3 818 aa21.95■■□□□ 1.1
PNKP-220ENST00000627232 GOLGA8QA0A0J9YX86 632 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 GOLGA8OA6NCC3 632 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 GOLGA8CPA6NN73 597 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 GOLGA8NF8WBI6 632 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 H3BMM5 538 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 CLASP2O75122 1294 aaKnown RBP21.94■■□□□ 1.1
PNKP-220ENST00000627232 PEX11AO75192 247 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 TM7SF2O76062 418 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 COX4I1P13073 169 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 CPOXP36551 454 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 PTPN5P54829 565 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 ZNF77Q15935 545 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 CDKN3Q16667 212 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 MYLK3Q32MK0 819 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 FUT11Q495W5 492 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 C22orf39Q6P5X5 142 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 TMEM25Q86YD3 366 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 CBARPQ8N350 705 aaPredicted RBP21.94■■□□□ 1.1
PNKP-220ENST00000627232 PHTF2Q8N3S3 785 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 RYBPQ8N488 228 aaPredicted RBP21.94■■□□□ 1.1
PNKP-220ENST00000627232 PCDH20Q8N6Y1 951 aaKnown RBP21.94■■□□□ 1.1
PNKP-220ENST00000627232 CFAP61Q8NHU2 1237 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 FBXO27Q8NI29 283 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 IRF7Q92985 503 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 OTUB2Q96DC9 234 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 C17orf80Q9BSJ5 609 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 CPEB1Q9BZB8 566 aaKnown RBP21.94■■□□□ 1.1
PNKP-220ENST00000627232 TNKS2Q9H2K2 1166 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 MRGBPQ9NV56 204 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 APPL1Q9UKG1 709 aa21.94■■□□□ 1.1
PNKP-220ENST00000627232 SYCE1LA8MT33 242 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 SDHDO14521 159 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 NEMP1O14524 444 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 CSPG5O95196 566 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 MTHFD2P13995 350 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 RPS3P23396 243 aaKnown RBP eCLIP21.93■■□□□ 1.1
PNKP-220ENST00000627232 EPHA3P29320 983 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 CTSOP43234 321 aaPredicted RBP21.93■■□□□ 1.1
PNKP-220ENST00000627232 INHBCP55103 352 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 PDCD2Q16342 344 aaPredicted RBP21.93■■□□□ 1.1
PNKP-220ENST00000627232 SLC5A9Q2M3M2 681 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 LYPLAL1Q5VWZ2 237 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 PTGR2Q8N8N7 351 aaPredicted RBP21.93■■□□□ 1.1
PNKP-220ENST00000627232 CEP70Q8NHQ1 597 aa21.93■■□□□ 1.1
PNKP-220ENST00000627232 RIN3Q8TB24 985 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms