RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TYW5A2RUC4 315 aaKnown RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 A8MU76 341 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF99A8MXY4 864 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SCO2O43819 266 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 IDH3BO43837 385 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 UPK1BO75841 260 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SLC6A2P23975 617 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 IL12AP29459 219 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CCND3P30281 292 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 BMPR1AP36894 532 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ADCYAP1R1P41586 468 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 TKTL1P51854 596 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ACOX1Q15067 660 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 FAM83EQ2M2I3 478 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 C6orf141Q5SZD1 244 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 COL13A1Q5TAT6 717 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 LARP4Q71RC2 724 aaKnown RBP eCLIP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 FKBP9P1Q75LS8 142 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 PIGZQ86VD9 579 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 C11orf74Q86VG3 221 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 FUNDC1Q8IVP5 155 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 IQCF2Q8IXL9 164 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SVOPQ8N4V2 548 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF555Q8NEP9 628 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 RHOXF1Q8NHV9 184 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SDCCAG3Q96C92 435 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 NXNL1Q96CM4 212 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 MED30Q96HR3 178 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CYP2S1Q96SQ9 504 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SH3GL1Q99961 368 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 NIFKQ9BYG3 293 aaKnown RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 RNF208Q9H0X6 261 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ALG2Q9H553 416 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 PCDH12Q9NPG4 1184 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF302Q9NR11 478 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CMTM6Q9NX76 183 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 MAP10Q9P2G4 905 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 GMPR2Q9P2T1 348 aaKnown RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CRNNQ9UBG3 495 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ANGPTL3Q9Y5C1 460 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 PCDHGA11Q9Y5H2 935 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 EVPLLA8MZ36 301 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 TOR1BO14657 336 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 TULP3O75386 442 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 IPO13O94829 963 aaKnown RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SEC24AO95486 1093 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 TXNP10599 105 aaKnown RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CYBAP13498 195 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 AKR1A1P14550 325 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 GOT1P17174 413 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 AVPR1AP37288 418 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CHRNEQ04844 493 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 VAC14Q08AM6 782 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 INCA1Q0VD86 236 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 TTLL4Q14679 1199 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 MAPK11Q15759 364 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 PRSS48Q7RTY5 328 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 PROSER1Q86XN7 944 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SLC41A1Q8IVJ1 513 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SLC22A9Q8IVM8 553 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 ZBTB8OSQ8IWT0 167 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CLEC4FQ8N1N0 589 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 MIER2Q8N344 545 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 TSPEARQ8WU66 669 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 LRRC58Q96CX6 371 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 NODALQ96S42 347 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SLC30A3Q99726 388 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 KCTD14Q9BQ13 255 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 C11orf84Q9BUA3 381 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 IL1RL2Q9HB29 575 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CNGB3Q9NQW8 809 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SIX4Q9UIU6 781 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 PCDHGB1Q9Y5G3 927 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 MAFBQ9Y5Q3 323 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 PLXNA1Q9UIW2 1896 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 FXYD1O00168 92 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 KATNA1O75449 491 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CHRNA1P02708 482 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 ALPLP05186 524 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF865P0CJ78 1059 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SCNN1AP37088 669 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 EIF2DP41214 584 aaKnown RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 NR4A2P43354 598 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 TRPC1P48995 793 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 ALDH7A1P49419 539 aaKnown RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CLCQ05315 142 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 GOLGA7BQ2TAP0 167 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 OTUD3Q5T2D3 398 aaPredicted RBP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 MPZL3Q6UWV2 235 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SNX29P2Q8IUI4 249 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CLIP4Q8N3C7 705 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SLC22A17Q8WUG5 538 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 ATL1Q8WXF7 558 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 KHSRPQ92945 711 aaKnown RBP eCLIP10.78□□□□□ -0.68
UPF3A-212ENST00000619079 GLMNQ92990 594 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 SNX18Q96RF0 628 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 OMDQ99983 421 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 ASPSCR1Q9BZE9 553 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 CHRAC1Q9NRG0 131 aa10.78□□□□□ -0.68
UPF3A-212ENST00000619079 NPAP1Q9NZP6 1156 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms