RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PDIK1LQ8N165 341 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 MFSD2AQ8NA29 543 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 FAM174AQ8TBP5 190 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 AGAP2Q99490 1192 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 WDR83Q9BRX9 315 aaKnown RBP19.62■□□□□ 0.73
UPF3A-211ENST00000618700 FAM129AQ9BZQ8 928 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 CHRAC1Q9NRG0 131 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 AASDHPPTQ9NRN7 309 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 FAM114A2Q9NRY5 505 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 TREX1Q9NSU2 369 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 ZDHHC18Q9NUE0 388 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 SLC2A6Q9UGQ3 507 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 OTOGLQ3ZCN5 2332 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 PRR5-ARHGAP8B1AHC4 643 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 E7ESA3 106 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 TOR1BO14657 336 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 RETP07949 1114 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 RHOXF2BP0C7M4 288 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 GNSP15586 552 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 CD38P28907 300 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 MPLP40238 635 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 ARSDP51689 593 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 AFF3P51826 1226 aaKnown RBP19.61■□□□□ 0.73
UPF3A-211ENST00000618700 PLTPP55058 493 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 ARL4CP56559 192 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 XIAPP98170 497 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 DHX9Q08211 1270 aaKnown RBP19.61■□□□□ 0.73
UPF3A-211ENST00000618700 CAMK2BQ13554 666 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 INPP5AQ14642 412 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 STAT4Q14765 748 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 SKIDA1Q1XH10 827 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 PLA2G2CQ5R387 149 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 TEX35Q5T0J7 233 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 RAET1GQ6H3X3 334 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 LAYNQ6UX15 382 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 ADAMTSL4Q6UY14 1074 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 RABEPKQ7Z6M1 372 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 ALYREFQ86V81 257 aaKnown RBP19.61■□□□□ 0.73
UPF3A-211ENST00000618700 TRAM1L1Q8N609 369 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 OR13H1Q8NG92 308 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 RHOXF2Q9BQY4 288 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 ZSCAN5AQ9BUG6 496 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 PHACTR1Q9C0D0 580 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 RRAGDQ9NQL2 400 aaPredicted RBP19.61■□□□□ 0.73
UPF3A-211ENST00000618700 GDF3Q9NR23 364 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 FKBPLQ9UIM3 349 aa19.61■□□□□ 0.73
UPF3A-211ENST00000618700 GLYATL1P3A0A0U1RQE8 302 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 CCDC78A2IDD5 438 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 FADS2P1A8MWK0 482 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 CCL22O00626 93 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 VILLO15195 856 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 BANF1O75531 89 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 LMNAP02545 664 aaKnown RBP19.6■□□□□ 0.73
UPF3A-211ENST00000618700 PYGLP06737 847 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 GPR1P46091 355 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 TMPRSS15P98073 1019 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 OVGP1Q12889 678 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 PEX6Q13608 980 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 BBS9Q3SYG4 887 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 PDPK2PQ6A1A2 396 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 LRRC39Q96DD0 335 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 TEX101Q9BY14 249 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 ARRDC1-AS1Q9H2J1 176 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 SAMD15Q9P1V8 674 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 APPL1Q9UKG1 709 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 CACNA1EQ15878 2313 aa19.6■□□□□ 0.73
UPF3A-211ENST00000618700 WDR87Q6ZQQ6 2873 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 FAM237BA0A1B0GVD1 139 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 MAGEB16A2A368 324 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 HOXC4P09017 264 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-211ENST00000618700 NMBRP28336 390 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 ECHS1P30084 290 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 RABIFP47224 123 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 KIAA1024LP59773 190 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 YPEL5P62699 121 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 DUOXA1Q1HG43 343 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 CASC4Q6P4E1 433 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 FAM151BQ6UXP7 276 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 Q6ZSR6 202 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 PTAR1Q7Z6K3 402 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-211ENST00000618700 TMEM135Q86UB9 458 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 HEATR4Q86WZ0 1026 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 SLC22A18ASQ8N1D0 253 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 CEP76Q8TAP6 659 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 MFSD3Q96ES6 412 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 STAMBPL1Q96FJ0 436 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 CDKN2AIPNLQ96HQ2 116 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 TBATAQ96M53 351 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 EBNA1BP2Q99848 306 aaKnown RBP19.59■□□□□ 0.73
UPF3A-211ENST00000618700 TRIM56Q9BRZ2 755 aaKnown RBP19.59■□□□□ 0.73
UPF3A-211ENST00000618700 APOOQ9BUR5 198 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 SPATA16Q9BXB7 569 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 FOXP3Q9BZS1 431 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 WDR26Q9H7D7 661 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 CAPN10Q9HC96 672 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 GMEB2Q9UKD1 530 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 CNOT6Q9ULM6 557 aaKnown RBP19.59■□□□□ 0.73
UPF3A-211ENST00000618700 FNDC3AQ9Y2H6 1198 aaKnown RBP19.59■□□□□ 0.73
UPF3A-211ENST00000618700 OR1A2Q9Y585 309 aa19.59■□□□□ 0.73
UPF3A-211ENST00000618700 TEX264Q9Y6I9 313 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms