RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SIM2Q14190 667 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 TRIM71Q2Q1W2 868 aaKnown RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 IL23RQ5VWK5 629 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 LENG1Q96BZ8 264 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 TWNKQ96RR1 684 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 SLC9A7Q96T83 725 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 TTPALQ9BTX7 342 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 RHOBTB2Q9BYZ6 727 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 SLC7A8Q9UHI5 535 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 NFAT5O94916 1531 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 G3V2T6 193 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 STX11O75558 287 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 NADKO95544 446 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 IL1BP01584 269 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ITPKAP23677 461 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 HOXD13P35453 343 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 FLT3LGP49771 235 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 POLR2JP52435 117 aaKnown RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ATP12AP54707 1039 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 LCP2Q13094 533 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 KLHL17Q6TDP4 642 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 UBE2R2Q712K3 238 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 PROSER1Q86XN7 944 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 CACTIN-AS1Q8N1I8 211 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 DEPDC4Q8N2C3 294 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF483Q8TF39 744 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 GIPC3Q8TF64 312 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ESAMQ96AP7 390 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 DNAJC1Q96KC8 554 aaKnown RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 LPIN3Q9BQK8 851 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 SLC17A6Q9P2U8 582 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ANGPT4Q9Y264 503 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 GON4LQ3T8J9 2241 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 NEMP2A6NFY4 417 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 H0YC42 278 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 SUV39H1O43463 412 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 OR10H3O60404 316 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 USP2O75604 605 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-212ENST00000616140 ITGA2P17301 1181 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CXCR2P25025 360 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CHRNA4P43681 627 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CCR4P51679 360 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CLCQ05315 142 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 HNRNPDQ14103 355 aaKnown RBP13.96□□□□□ -0.17
CPSF1-212ENST00000616140 DPYSL2Q16555 572 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 LINGO4Q6UY18 593 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 OR7D4Q8NG98 312 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 LRRC15Q8TF66 581 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 MYDGFQ969H8 173 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CNTN6Q9UQ52 1028 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 ASF1AQ9Y294 204 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 C3P01024 1663 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 DYTNA2CJ06 578 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 BTBD19C9JJ37 291 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 QSOX1O00391 747 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 TBX10O75333 385 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 STK16O75716 305 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 KIR3DL1P43629 444 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 LIPEQ05469 1076 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 TRIM40Q6P9F5 258 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 UTS2BQ765I0 119 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 SPATA19Q7Z5L4 167 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 UNC5BQ8IZJ1 945 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 NIPA2Q8N8Q9 360 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 PLEKHO2Q8TD55 490 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 STYXQ8WUJ0 223 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CLP1Q92989 425 aaKnown RBP13.96□□□□□ -0.17
CPSF1-212ENST00000616140 SNX27Q96L92 541 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 IPPKQ9H8X2 491 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CLN6Q9NWW5 311 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 TOR4AQ9NXH8 423 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF624Q9P2J8 865 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-212ENST00000616140 RAB23Q9ULC3 237 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF490Q9ULM2 529 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-212ENST00000616140 IQCF5A8MTL0 148 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 H0Y858 1186 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 TNFRSF21O75509 655 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CHRNGP07510 517 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 SLC6A2P23975 617 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 GABRR2P28476 465 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 IL12RB1P42701 662 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 CXCR3P49682 368 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 MYO19Q96H55 970 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 NMUR1Q9HB89 426 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 LRTM1Q9HBL6 345 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 OGDHLQ9ULD0 1010 aa13.96□□□□□ -0.17
CPSF1-212ENST00000616140 MRPS7Q9Y2R9 242 aaKnown RBP13.96□□□□□ -0.17
CPSF1-212ENST00000616140 ANKRD26Q9UPS8 1709 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 SLC9A3R1O14745 358 aaPredicted RBP13.96□□□□□ -0.18
CPSF1-212ENST00000616140 C4BPBP20851 252 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 ADSLP30566 484 aaPredicted RBP13.96□□□□□ -0.18
CPSF1-212ENST00000616140 SPIBQ01892 262 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 ACAP2Q15057 778 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 TSTD2Q5T7W7 516 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 LYPLAL1Q5VWZ2 237 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 TMEM198Q66K66 360 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 KBTBD8Q8NFY9 601 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 FAM124BQ9H5Z6 455 aaPredicted RBP13.96□□□□□ -0.18
CPSF1-212ENST00000616140 RASSF1Q9NS23 344 aa13.96□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF232Q9UNY5 417 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms