RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZSCAN5AQ9BUG6 496 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 SPATA16Q9BXB7 569 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 IL26Q9NPH9 171 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 CASS4Q9NQ75 786 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 RRAGDQ9NQL2 400 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 DLL3Q9NYJ7 618 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 CNOT6Q9ULM6 557 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 MYLKQ15746 1914 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 STX7O15400 261 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 SDC3O75056 442 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PIAS2O75928 621 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 JUNDP17535 347 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 TPSB2P20231 275 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PTGIRP43119 386 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 MAGEA6P43360 314 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 HNRNPKP61978 463 aaKnown RBP eCLIP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 CDK16Q00536 496 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PDE1BQ01064 536 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PPARDQ03181 441 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 KCNJ11Q14654 390 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 POU6F1Q14863 301 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 SUZ12Q15022 739 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 TPSAB1Q15661 275 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 KANSL1Q7Z3B3 1105 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 PHACTR4Q8IZ21 702 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 TRAM1L1Q8N609 369 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 OR4K2Q8NGD2 314 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 TSACCQ96A04 125 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 COX14Q96I36 57 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 HIC2Q96JB3 615 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 RTKNQ9BST9 563 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 TCEAL2Q9H3H9 227 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 FGF22Q9HCT0 170 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 KLQ9UEF7 1012 aa16.45■□□□□ 0.22
CCDC28A-202ENST00000611852 SPTBN4Q9H254 2564 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 LRP4O75096 1905 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 TCRBV7S3A2A0A539 114 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 TNFRSF10CO14798 259 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 INPP4BO15327 924 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 TUBB4AP04350 444 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 DGKAP23743 735 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 SPAM1P38567 509 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF140P52738 457 aaPredicted RBP16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 HK3P52790 923 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 SRP54P61011 504 aaKnown RBP16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 PPP1R7Q15435 360 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 CERCAMQ5T4B2 595 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 PDPK2PQ6A1A2 396 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 PIP4P1Q86T03 277 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 TRIM74Q86UV6 250 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 RBFAQ8N0V3 343 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 SLC25A45Q8N413 288 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 DTX3LQ8TDB6 740 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 OR1E3Q8WZA6 343 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 CPT1BQ92523 772 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 PDXPQ96GD0 296 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 RUNDC3BQ96NL0 473 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 C19orf43Q9BQ61 176 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 FRMD8Q9BZ67 464 aaPredicted RBP16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 MRPL40Q9NQ50 206 aaKnown RBP16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 UCKL1Q9NWZ5 548 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 DGKBQ9Y6T7 804 aa16.44■□□□□ 0.22
CCDC28A-202ENST00000611852 GLYATL1P3A0A0U1RQE8 302 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 H3BM21 787 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 KIF2AO00139 706 aaPredicted RBP16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 GAPDHSO14556 408 aaPredicted RBP16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 FLRT2O43155 660 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 SH3BP5O60239 455 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 RASGRP1O95267 797 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 CEACAM5P06731 702 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 BLKP51451 505 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 TERF1P54274 439 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 PTK6Q13882 451 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 SEPT6Q14141 434 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 FAM151BQ6UXP7 276 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF534Q76KX8 674 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 RD3Q7Z3Z2 195 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 HID1Q8IV36 788 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 NAXDQ8IW45 347 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF548Q8NEK5 533 aaPredicted RBP16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 SPATA4Q8NEY3 305 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 OR13C4Q8NGS5 318 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 BTN2A2Q8WVV5 523 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 SLC13A1Q9BZW2 595 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 APOBEC3BQ9UH17 382 aaKnown RBP16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 SLC17A4Q9Y2C5 497 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 BTBD3Q9Y2F9 522 aa16.43■□□□□ 0.22
CCDC28A-202ENST00000611852 PRSS38A1L453 326 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 MROH6A6NGR9 719 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 FUCA1P04066 466 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 DR1Q01658 176 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 CHRNA6Q15825 494 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 ATP13A5Q4VNC0 1218 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 CCDC38Q502W7 563 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 PRRT3Q5FWE3 981 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 ANKRD22Q5VYY1 191 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 SETD7Q8WTS6 366 aaKnown RBP16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 PTCD2Q8WV60 388 aaKnown RBP16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF592Q92610 1267 aa16.42■□□□□ 0.22
CCDC28A-202ENST00000611852 GLYATL1Q969I3 302 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms