RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ARHGAP6O43182 974 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 TCEA3O75764 348 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 EPOP01588 193 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 SLC4A1P02730 911 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 IVLP07476 585 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 GM2AP17900 193 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 NFKB1P19838 968 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 PTPN7P35236 360 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 GEMP55040 296 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 OTUD4Q01804 1114 aaKnown RBP14.07□□□□□ -0.16
LIG1-218ENST00000599322 CYP4F3Q08477 520 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 MPP3Q13368 585 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 SPIDRQ14159 915 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 NOMO1Q15155 1222 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 PTPRRQ15256 657 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 ZDHHC20Q5W0Z9 365 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 RBM44Q6ZP01 1051 aaKnown RBP14.07□□□□□ -0.16
LIG1-218ENST00000599322 LSMEM2Q8N112 164 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 DCBLD1Q8N8Z6 715 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 SPATA22Q8NHS9 363 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 MDM1Q8TC05 714 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 ACTL9Q8TC94 416 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 FCRL5Q96RD9 977 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 DESI2Q9BSY9 194 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 ZSCAN5AQ9BUG6 496 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 SPATA16Q9BXB7 569 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 FRMD8Q9BZ67 464 aaPredicted RBP14.07□□□□□ -0.16
LIG1-218ENST00000599322 UBP1Q9NZI7 540 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 SUFUQ9UMX1 484 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 SHOC2Q9UQ13 582 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 AAR2Q9Y312 384 aaKnown RBP14.07□□□□□ -0.16
LIG1-218ENST00000599322 B4DGG1 531 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 INPP4BO15327 924 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 MT-CYBP00156 380 aaPredicted RBP14.06□□□□□ -0.16
LIG1-218ENST00000599322 CEACAM5P06731 702 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 CELA2BP08218 269 aaPredicted RBP14.06□□□□□ -0.16
LIG1-218ENST00000599322 RBP3P10745 1247 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 HLA-DPA1P20036 260 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 WNT3AP56704 352 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 WASHC5Q12768 1159 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 LRP8Q14114 963 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 ZNF569Q5MCW4 686 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 SEL1L2Q5TEA6 688 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 PDPK2PQ6A1A2 396 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 C19orf48Q6RUI8 117 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 MARK2Q7KZI7 788 aaKnown RBP14.06□□□□□ -0.16
LIG1-218ENST00000599322 LYSMD3Q7Z3D4 306 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 MARCH9Q86YJ5 346 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 ZNF567Q8N184 647 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 IPMKQ8NFU5 416 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 ALS2CR12Q96Q35 445 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 OR2M4Q96R27 311 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 CCDC3Q9BQI4 270 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 STN1Q9H668 368 aaKnown RBP14.06□□□□□ -0.16
LIG1-218ENST00000599322 RMI1Q9H9A7 625 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.06□□□□□ -0.16
LIG1-218ENST00000599322 DKK4Q9UBT3 224 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 ZNHIT2Q9UHR6 403 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 PNMA8BQ9ULN7 279 aaPredicted RBP14.06□□□□□ -0.16
LIG1-218ENST00000599322 SLC17A4Q9Y2C5 497 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 ZNF711Q9Y462 761 aa14.06□□□□□ -0.16
LIG1-218ENST00000599322 A0A0U1RQS6 177 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 RHPN2P1A8MT19 583 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 KCNN4O15554 427 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 CSO75390 466 aaKnown RBP14.05□□□□□ -0.16
LIG1-218ENST00000599322 SLC25A14O95258 325 aaPredicted RBP14.05□□□□□ -0.16
LIG1-218ENST00000599322 PIRTP0C851 137 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 PYGMP11217 842 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 SLC2A4P14672 509 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 GLB1P16278 677 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 RBL1P28749 1068 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 ACTN2P35609 894 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 ADCY8P40145 1251 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 PPM1FP49593 454 aaPredicted RBP14.05□□□□□ -0.16
LIG1-218ENST00000599322 ADCY2Q08462 1091 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 C14orf28Q4W4Y0 310 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 ALS2CLQ60I27 953 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 LRRC69Q6ZNQ3 347 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 TMC3Q7Z5M5 1100 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 TMEM139Q8IV31 216 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 LRRC57Q8N9N7 239 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 KYQ8NBH2 561 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 GPBAR1Q8TDU6 330 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 ZDHHC1Q8WTX9 485 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 TTC25Q96NG3 672 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 SMIM14Q96QK8 99 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 GFM1Q96RP9 751 aaKnown RBP14.05□□□□□ -0.16
LIG1-218ENST00000599322 TRIB3Q96RU7 358 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 STRADBQ9C0K7 418 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 CAAP1Q9H8G2 361 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 VPS18Q9P253 973 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 GUCA1BQ9UMX6 200 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 TMEM98Q9Y2Y6 226 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 PKP3Q9Y446 797 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 LRRK1Q38SD2 2015 aa14.05□□□□□ -0.16
LIG1-218ENST00000599322 ARID1BQ8NFD5 2236 aaPredicted RBP14.05□□□□□ -0.16
LIG1-218ENST00000599322 LY6G6EA0A0G2JKS1 128 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 RRP8O43159 456 aaKnown RBP14.04□□□□□ -0.16
LIG1-218ENST00000599322 USP12O75317 370 aa14.04□□□□□ -0.16
LIG1-218ENST00000599322 FTCDO95954 541 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms