RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 DENND2CQ68D51 928 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 RAET1GQ6H3X3 334 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 TMEM71Q6P5X7 295 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 TECPR1Q7Z6L1 1165 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 CACNA2D3Q8IZS8 1091 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PGBD5Q8N414 524 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 ZNF564Q8TBZ8 553 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PDCD6IPQ8WUM4 868 aaKnown RBP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PTCD2Q8WV60 388 aaKnown RBP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PATE1Q8WXA2 126 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 ART4Q93070 314 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 CSPG4P5Q96PW8 444 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 TEFMQ96QE5 360 aaKnown RBP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 MCCC1Q96RQ3 725 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 DNAJC7Q99615 494 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PCDH18Q9HCL0 1135 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.46□□□□□ -0.41
TRIM28-212ENST00000597995 SLC39A1Q9NY26 324 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 KCNK4Q9NYG8 393 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 PDP2Q9P2J9 529 aa12.46□□□□□ -0.41
TRIM28-212ENST00000597995 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.46□□□□□ -0.411e-11■□□□□ 8.5
TRIM28-212ENST00000597995 COL12A1Q99715 3063 aa12.46□□□□□ -0.42
TRIM28-212ENST00000597995 NPIPB15A6NHN6 443 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-212ENST00000597995 H3BRJ5 948 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 RAD1O60671 282 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 MAFKO60675 156 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 PGLSO95336 258 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 PYGLP06737 847 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 CD48P09326 243 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 LIFP15018 202 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 CSF2RBP32927 897 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 ACTR1BP42025 376 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 GPR1P46091 355 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 CCR10P46092 362 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 FASLGP48023 281 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 ARSEP51690 589 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 POLE2P56282 527 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 ACTR1AP61163 376 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 TRAF2Q12933 501 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 MMRN1Q13201 1228 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 KCNAB2Q13303 367 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 PYCR3Q53H96 274 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 DCAF12Q5T6F0 453 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 ARMC12Q5T9G4 340 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 NKAIN2Q5VXU1 208 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 ADAMTSL4Q6UY14 1074 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 USP45Q70EL2 814 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 VSTM4Q8IW00 320 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 NDUFAF2Q8N183 169 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 RNF214Q8ND24 703 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 OR8K1Q8NGG5 319 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 FAM71BQ8TC56 605 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 NSMCE1Q8WV22 266 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 TEKT4Q8WW24 435 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 PMEPA1Q969W9 287 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 SLC45A3Q96JT2 553 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 OR2M4Q96R27 311 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 CHP1Q99653 195 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 TSPY26PQ9H489 355 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 NOD2Q9HC29 1040 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 IP6K2Q9UHH9 426 aa12.45□□□□□ -0.42
TRIM28-212ENST00000597995 GOLGA6CA6NDK9 693 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 GOLGA6BA6NDN3 693 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 ZNF891A8MT65 544 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-212ENST00000597995 SOD1P00441 154 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 GOLGA6DP0CG33 693 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 ARL4AP40617 200 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 TAS2R40P59535 323 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 LRP8Q14114 963 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 SLC18A3Q16572 532 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 MARC1Q5VT66 337 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 TMCO3Q6UWJ1 677 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 ZNF765Q7L2R6 523 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 RAVER1Q8IY67 606 aaKnown RBP12.44□□□□□ -0.42
TRIM28-212ENST00000597995 BMPERQ8N8U9 685 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 OR10G6Q8NH81 332 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 PIH1D2Q8WWB5 315 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 AHCYL2Q96HN2 611 aaKnown RBP12.44□□□□□ -0.42
TRIM28-212ENST00000597995 ZPBPQ9BS86 351 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 EFHD1Q9BUP0 239 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 SPRY4Q9C004 299 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 ABCG8Q9H221 673 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 OCIAD1Q9NX40 245 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 GOLGA6AQ9NYA3 693 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 PILRAQ9UKJ1 303 aa12.44□□□□□ -0.42
TRIM28-212ENST00000597995 DOPEY2Q9Y3R5 2298 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 SSU72P8A0A1W2PR75 194 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 EFCAB7A8K855 629 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MYO1FO00160 1098 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 DUX1O43812 170 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 ZNF30P17039 623 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MPSTP25325 297 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MAP4P27816 1152 aaKnown RBP12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MAN1A1P33908 653 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MMP13P45452 471 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 CDH6P55285 790 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MAXP61244 160 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 MC2RQ01718 297 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 PTSQ03393 145 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 ANKS6Q68DC2 871 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms