RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ADAMTSL4Q6UY14 1074 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 HSD11B1LQ7Z5J1 315 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SLC9B2Q86UD5 537 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 AVL9Q8NBF6 648 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 PSKH2Q96QS6 385 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 HERPUD2Q9BSE4 406 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SELENOOQ9BVL4 669 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 RCOR3Q9P2K3 495 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 NOCTQ9UK39 431 aaKnown RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 FZD10Q9ULW2 581 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 SRPK3Q9UPE1 567 aa10.06□□□□□ -0.8
TRIM28-210ENST00000597618 PCDHGA9Q9Y5G4 932 aaKnown RBP10.06□□□□□ -0.8
TRIM28-210ENST00000597618 ANKRD62A6NC57 917 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 C21orf140B9A014 251 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 TOX3O15405 576 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 CCP110O43303 1012 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 HTRA2O43464 458 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 LRCH4O75427 683 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 KIAA0754O94854 1291 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 NDUFA10O95299 355 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 CLDN1O95832 211 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 EML2O95834 649 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 SOD1P00441 154 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 MT-ND3P03897 115 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 PYGLP06737 847 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 PRKCSHP14314 528 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 UCHL3P15374 230 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 LHCGRP22888 699 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 VARSP26640 1264 aaKnown RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 CDR2Q01850 454 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 DNASE1L3Q13609 305 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 IL11RAQ14626 422 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 INPP5JQ15735 1006 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 TRIM72Q6ZMU5 477 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 Q6ZVL8 140 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 MARK2Q7KZI7 788 aaKnown RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 RASGRP3Q8IV61 690 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 CBARPQ8N350 705 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 SLC30A5Q8TAD4 765 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 FNIP1Q8TF40 1166 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 PDCD6IPQ8WUM4 868 aaKnown RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 SLC20A1Q8WUM9 679 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 THAP4Q8WY91 577 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 PHF12Q96QT6 1004 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 SLC25A23Q9BV35 468 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 NAA15Q9BXJ9 866 aaKnown RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 TRIM55Q9BYV6 548 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 SLC39A8Q9C0K1 460 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 NDST4Q9H3R1 872 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 CNOT8Q9UFF9 292 aaKnown RBP10.05□□□□□ -0.8
TRIM28-210ENST00000597618 LNPEPQ9UIQ6 1025 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 TMEM98Q9Y2Y6 226 aa10.05□□□□□ -0.8
TRIM28-210ENST00000597618 KIR2DS5A0A0G2JLQ3 304 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 A0A0G2JNG1 304 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 A6NCN8 305 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 GOLGA6L3A6NEY3 463 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 WIPF3A6NGB9 483 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 NPIPB15A6NHN6 443 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 LILRA5A6NI73 299 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 TCP11X1B4DZS4 312 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 KIR2DS3K7RE56 304 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 DFFAO00273 331 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 DESP17661 470 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 HSPA9P38646 679 aaKnown RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 NSFP46459 744 aaKnown RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF143P52747 638 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 FMO1Q01740 532 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 IL10RBQ08334 325 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 MRPL49Q13405 166 aaKnown RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF235Q14590 738 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 KIR2DS5Q14953 304 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 EIF2S3LQ2VIR3 472 aaKnown RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 VWA3BQ502W6 1294 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 TMCO4Q5TGY1 634 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 PAPD7Q5XG87 772 aaKnown RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 CYB5D1Q6P9G0 228 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 IYDQ6PHW0 289 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 WDR59Q6PJI9 974 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 USP45Q70EL2 814 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 TRIM74Q86UV6 250 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 C3orf20Q8ND61 904 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 PRR7Q8TB68 274 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 AP2M1Q96CW1 435 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 C9orf72Q96LT7 481 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 NSMCE3Q96MG7 304 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF599Q96NL3 588 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 OR6C1Q96RD1 312 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 MCCC1Q96RQ3 725 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 STK33Q9BYT3 514 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 ACTL8Q9H568 366 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF768Q9H5H4 540 aaKnown RBP10.04□□□□□ -0.8
TRIM28-210ENST00000597618 MLXIPLQ9NP71 852 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 ADAM22Q9P0K1 906 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 KIAA1468Q9P260 1216 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 TBC1D29Q9UFV1 150 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 PADI1Q9ULC6 663 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 PHTF1Q9UMS5 762 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 PCDHGC4Q9Y5F7 938 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 MED13Q9UHV7 2174 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms