RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SCAMP3O14828 347 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 CLASP2O75122 1294 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 GOT2P00505 430 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 MAP4P27816 1152 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 AGTR2P50052 363 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 TXNL4AP83876 142 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 OR4D1Q15615 310 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 LARP4Q71RC2 724 aaKnown RBP eCLIP15.22■□□□□ 0.03
UPF1-204ENST00000596842 CFAP52Q8N1V2 620 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 DHRSXQ8N5I4 330 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 OR13J1Q8NGT2 312 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 CMTM6Q9NX76 183 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 TCRBV3S1A0A5B6 114 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 KATNA1O75449 491 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 PENKP01210 267 aaPredicted RBP15.21■□□□□ 0.03
UPF1-204ENST00000596842 AXLP30530 894 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 FGD3Q5JSP0 725 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 DUS1LQ6P1R4 473 aaKnown RBP15.21■□□□□ 0.03
UPF1-204ENST00000596842 BNIPLQ7Z465 357 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 EFHBQ8N7U6 833 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 IL12RB2Q99665 862 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 ZBED2Q9BTP6 218 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 PRKD2Q9BZL6 878 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 TRIM15Q9C019 465 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 CCDC90BQ9GZT6 254 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 SLC38A7Q9NVC3 462 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.21■□□□□ 0.03
UPF1-204ENST00000596842 PRELID1Q9Y255 219 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 PRG3Q9Y2Y8 225 aaPredicted RBP15.21■□□□□ 0.03
UPF1-204ENST00000596842 HHLA1C9JL84 531 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 GGT5P36269 586 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 PMS2P3Q13401 168 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 TSNQ15631 228 aaKnown RBP15.21■□□□□ 0.03
UPF1-204ENST00000596842 SLC39A12Q504Y0 691 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 NHSL2Q5HYW2 709 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 CYHR1Q6ZMK1 362 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 EPHX4Q8IUS5 362 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 TMEM126BQ8IUX1 230 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 BPIFB6Q8NFQ5 453 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 LRRC58Q96CX6 371 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 TEX37Q96LM6 180 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 KATNBL1Q9H079 304 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 WDR37Q9Y2I8 494 aa15.21■□□□□ 0.03
UPF1-204ENST00000596842 MAN1A2O60476 641 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 ATE1O95260 518 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 ODC1P11926 461 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 GRK4P32298 578 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 RENBPP51606 427 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 CRYBB1P53674 252 aaPredicted RBP15.21■□□□□ 0.02
UPF1-204ENST00000596842 CDC42EP1Q00587 391 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 SIRPB2Q5JXA9 342 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 TIGD7Q6NT04 549 aaPredicted RBP15.21■□□□□ 0.02
UPF1-204ENST00000596842 CXCL17Q6UXB2 119 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 FBXO39Q8N4B4 442 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 CDYL2Q8N8U2 506 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 CEP295NLQ96MC4 621 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 GID8Q9NWU2 228 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 CD300AQ9UGN4 299 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 SUN2Q9UH99 717 aa15.21■□□□□ 0.02
UPF1-204ENST00000596842 TRIM64CA6NLI5 447 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 BTN3A1O00481 513 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 KCNH1O95259 989 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 F2P00734 622 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 LBPP18428 481 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 DNAJB13P59910 316 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 UFM1P61960 85 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 LIPEQ05469 1076 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 ZNF235Q14590 738 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 IQSEC1Q6DN90 963 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 OGFOD2Q6N063 350 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 BHLHA9Q7RTU4 235 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 CNTN4Q8IWV2 1026 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 FNDC5Q8NAU1 212 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 DDHD1Q8NEL9 900 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 ALG2Q9H553 416 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 BPIFA1Q9NP55 256 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 PARNO95453 639 aaKnown RBP15.2■□□□□ 0.02
UPF1-204ENST00000596842 GPX3P22352 226 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 ELK4P28324 431 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 HERVK_113P63132 956 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 KCTD8Q6ZWB6 473 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 PLEKHH3Q7Z736 793 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 STK32CQ86UX6 486 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 TFAP2CQ92754 450 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 ERVK-6Q9BXR3 956 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 INTS7Q9NVH2 962 aaKnown RBP15.2■□□□□ 0.02
UPF1-204ENST00000596842 POLG2Q9UHN1 485 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 LAMA2P24043 3122 aaKnown RBP15.2■□□□□ 0.02
UPF1-204ENST00000596842 C1orf232A0A0U1RR37 186 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 CCDC162PA2VCL2 907 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 CD3EAPO15446 510 aaKnown RBP15.2■□□□□ 0.02
UPF1-204ENST00000596842 HALP42357 657 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 RXRGP48443 463 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 PIK3CGP48736 1102 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 PIGFQ07326 219 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 TRAP1Q12931 704 aaKnown RBP15.2■□□□□ 0.02
UPF1-204ENST00000596842 PAQR3Q6TCH7 311 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 DGCR6LQ9BY27 220 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 LTB4R2Q9NPC1 389 aa15.2■□□□□ 0.02
UPF1-204ENST00000596842 CDC7O00311 574 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms