RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 KCNT1Q5JUK3 1230 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 DCST1Q5T197 706 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 GPATCH4Q5T3I0 446 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 IKBIPQ70UQ0 350 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 SFR1Q86XK3 245 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 PCDH20Q8N6Y1 951 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 ZNF441Q8N8Z8 693 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 SPATA22Q8NHS9 363 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 FIG4Q92562 907 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 USP6NLQ92738 828 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 LMLNQ96KR4 655 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 IL17FQ96PD4 163 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 MTERF1Q99551 399 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 PDZD7Q9H5P4 517 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 LTB4R2Q9NPC1 389 aa4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 R3HDM2Q9Y2K5 976 aaKnown RBP4.51□□□□□ -1.69
SMCHD1-204ENST00000581226 PDS5AQ29RF7 1337 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 EME2A4GXA9 379 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 PRSS44E7EML9 344 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ZNF587BE7ETH6 402 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 HCRTR2O43614 444 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ACADMP11310 421 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 CAPN3P20807 821 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 UBA1P22314 1058 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 MAPK4P31152 587 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 PRCPP42785 496 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 RXRGP48443 463 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 GALCP54803 685 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ARF3P61204 181 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ARF1P84077 181 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ZBED6P86452 979 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 SLC20A2Q08357 652 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ADIPOQQ15848 244 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 FRG2Q64ET8 278 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ZNF280DQ6N043 979 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 KLHL35Q6PF15 583 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 UNQ6126/PRO20091Q6UXV3 157 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 GLDNQ6ZMI3 551 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 SEPT14Q6ZU15 432 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 SATL1Q86VE3 508 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ODF3L1Q8IXM7 274 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 BEST3Q8N1M1 668 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 SRBD1Q8N5C6 995 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 HMGCLL1Q8TB92 370 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 DUSP19Q8WTR2 217 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 RHBDF1Q96CC6 855 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 C1orf74Q96LT6 269 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 SH2D4AQ9H788 454 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 UBTD1Q9HAC8 227 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 EIF2B3Q9NR50 452 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 SEPT11Q9NVA2 429 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 HCFC1R1Q9NWW0 138 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 CWC15Q9P013 229 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 OR14J1Q9UGF5 321 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 ACSL5Q9ULC5 683 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 MTMR6Q9Y217 621 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 LYVE1Q9Y5Y7 322 aa4.5□□□□□ -1.69
SMCHD1-204ENST00000581226 IGHV4OR15-8A0A075B7B6 117 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 A0A1B0GUV1 79 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 MYO1GB0I1T2 1018 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 M0QZ24 198 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 TULP2O00295 520 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 S1PR1P21453 382 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 CORO1AP31146 461 aaKnown RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 FASLGP48023 281 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 ERVFC1-1P60608 527 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 PRAMEP78395 509 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 RPL36AP83881 106 aaKnown RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 TFAP4Q01664 338 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 POU3F1Q03052 451 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 ZBTB17Q13105 803 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 MAD2L1Q13257 205 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 LRIF1Q5T3J3 769 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 GKAP1Q5VSY0 366 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 SARM1Q6SZW1 724 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 C4orf50Q6ZRC1 276 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 C18orf65Q6ZTR6 163 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 TUBA1AQ71U36 451 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 RNF113BQ8IZP6 322 aaKnown RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 KCNH5Q8NCM2 988 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 SLC20A1Q8WUM9 679 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 ABTB1Q969K4 478 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 CMTM3Q96MX0 182 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 SEPT5Q99719 369 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 NCAPGQ9BPX3 1015 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 TUBA1CQ9BQE3 449 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 FTOQ9C0B1 505 aaKnown RBP eCLIP4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 KAT14Q9H8E8 782 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 PLSCR4Q9NRQ2 329 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 COPG2Q9UBF2 871 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 PADI1Q9ULC6 663 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 AMDHD2Q9Y303 409 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 PCDHAC2Q9Y5I4 1007 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 CLIC4Q9Y696 253 aa4.49□□□□□ -1.69
SMCHD1-204ENST00000581226 PRAC2D3DTV9 90 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 H3BQ06 376 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 HS3ST1O14792 307 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 ATP2A1O14983 1001 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 SCAMP1O15126 338 aa4.48□□□□□ -1.69
SMCHD1-204ENST00000581226 GNL1P36915 607 aaPredicted RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms