RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 NXNL1Q96CM4 212 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CHFRQ96EP1 664 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 SCRN2Q96FV2 425 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 NECTIN4Q96NY8 510 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 TCF12Q99081 682 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 TRMT61BQ9BVS5 477 aaKnown RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 OSBPL1AQ9BXW6 950 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 PITPNM3Q9BZ71 974 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 SIRPGQ9P1W8 387 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 EPS15L1Q9UBC2 864 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CD207Q9UJ71 328 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 USP15Q9Y4E8 981 aaPredicted RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 NUMBLQ9Y6R0 609 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 DOCK9Q9BZ29 2069 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 TMEM265A0A087WTH1 108 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 GLYATL1P3A0A0U1RQE8 302 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ANTXRLA6NF34 631 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 UPK3BL1B0FP48 263 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 UPK3BL2E5RIL1 263 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ARNTLO00327 626 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 GPR39O43194 453 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 EDF1O60869 148 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 DNAJC6O75061 913 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 SRP72O76094 671 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 RHOBTB1O94844 696 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 KLHL2O95198 593 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 KAT7O95251 611 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 WISP3O95389 354 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 PRAMEF1O95521 474 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 APODP05090 189 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 POU3F3P20264 500 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 ITGALP20701 1170 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 VIPR1P32241 457 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CA5AP35218 305 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 GLRBP48167 497 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 SOX9P48436 509 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 TTPAP49638 278 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 POLR2LP62875 67 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 TIAL1Q01085 375 aaKnown RBP eCLIP10.47□□□□□ -0.73
SS18-217ENST00000580958 DMTNQ08495 405 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CSHL1Q14406 222 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CHRNA6Q15825 494 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 DBN1Q16643 649 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 HNRNPA1L2Q32P51 320 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 POM121L1PQ3SYA9 428 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ZNF805Q5CZA5 627 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 AARS2Q5JTZ9 985 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 C9orf64Q5T6V5 341 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 RNF187Q5TA31 235 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 GKAP1Q5VSY0 366 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 CES4AQ5XG92 561 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 RFLNAQ6ZTI6 216 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 OTOAQ7RTW8 1153 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 TBC1D1Q86TI0 1168 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 PIM3Q86V86 326 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 LCA5Q86VQ0 697 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 SERPINA9Q86WD7 417 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 C10orf107Q8IVU9 208 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CACNA2D3Q8IZS8 1091 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CBARPQ8N350 705 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 KDM1BQ8NB78 822 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 SMRP1Q8NCR6 262 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CCDC197Q8NCU1 140 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 HEXDCQ8WVB3 486 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 SUSD6Q92537 303 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ZDHHC16Q969W1 377 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 PBXIP1Q96AQ6 731 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ARRDC3Q96B67 414 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 LRIG1Q96JA1 1093 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 GPR78Q96P69 363 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 TSSK1BQ9BXA7 367 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 UNKQ9C0B0 810 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 CCDC68Q9H2F9 335 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ASB8Q9H765 288 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 NMRAL1Q9HBL8 299 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 GPAMQ9HCL2 828 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 PCDH12Q9NPG4 1184 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 ZDHHC4Q9NPG8 344 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 IGSF5Q9NSI5 407 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 DKK3Q9UBP4 350 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 HCN2Q9UL51 889 aa10.47□□□□□ -0.73
SS18-217ENST00000580958 MTF2Q9Y483 593 aaPredicted RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 SPTBN5Q9NRC6 3674 aaKnown RBP10.47□□□□□ -0.73
SS18-217ENST00000580958 GRXCR2A6NFK2 248 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 GOLGA8CPA6NN73 597 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 C16orf96A6NNT2 1141 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 H3BQ06 376 aaPredicted RBP10.46□□□□□ -0.73
SS18-217ENST00000580958 KPNA3O00505 521 aaPredicted RBP10.46□□□□□ -0.73
SS18-217ENST00000580958 KLF11O14901 512 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 PFDN6O15212 129 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 OR1I1O60431 355 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 SNX3O60493 162 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 APOA4P06727 396 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 LTA4HP09960 611 aaKnown RBP10.46□□□□□ -0.73
SS18-217ENST00000580958 CCDC166P0CW27 439 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 FGF3P11487 239 aaPredicted RBP10.46□□□□□ -0.73
SS18-217ENST00000580958 PKMP14618 531 aaKnown RBP10.46□□□□□ -0.73
SS18-217ENST00000580958 CPA3P15088 417 aa10.46□□□□□ -0.73
SS18-217ENST00000580958 XPAP23025 273 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms