RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ATP13A5Q4VNC0 1218 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 RBM20Q5T481 1227 aaKnown RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 SEL1L3Q68CR1 1132 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 KDM7AQ6ZMT4 941 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 TRABD2AQ86V40 505 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 SRRM1Q8IYB3 904 aaKnown RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 RIBC1Q8N443 379 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 KLK6Q92876 244 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 HHIPQ96QV1 700 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 MED4Q9NPJ6 270 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 PKD2L2Q9NZM6 624 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 TXNDC16Q9P2K2 825 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 SLC30A1Q9Y6M5 507 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 LRRK1Q38SD2 2015 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 IGLON5A6NGN9 336 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 RECQL5O94762 991 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 LEPRP48357 1165 aaKnown RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 HSP90B2PQ58FF3 399 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 SYT13Q7L8C5 426 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 C4orf33Q8N1A6 199 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 DCLK2Q8N568 766 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 OR14C36Q8NHC7 312 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 ZNF398Q8TD17 642 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 CALML6Q8TD86 181 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 VPS39Q96JC1 886 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 NDNQ99608 321 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 FAM83DQ9H4H8 585 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 PPCSQ9HAB8 311 aa24.98■■□□□ 1.59
SHMT1-207ENST00000580002 ZFR2Q9UPR6 939 aaKnown RBP24.98■■□□□ 1.59
SHMT1-207ENST00000580002 PCDH8O95206 1070 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 SNRPAP09012 282 aaKnown RBP24.97■■□□□ 1.59
SHMT1-207ENST00000580002 LIMK2P53671 638 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 CACNG1Q06432 222 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 NFATC2Q13469 925 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 MRNIPQ6NTE8 343 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 ZNF549Q6P9A3 640 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 CMC1Q7Z7K0 106 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 SYNPOQ8N3V7 929 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 PJA1Q8NG27 643 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 RAB7BQ96AH8 199 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 FAM131CQ96AQ9 280 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 SGSM3Q96HU1 749 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 BOCQ9BWV1 1114 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 FBRSQ9HAH7 460 aa24.97■■□□□ 1.59
SHMT1-207ENST00000580002 K7ESM1 405 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 RFPL1O75677 317 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 SAT1P21673 171 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 TYSND1Q2T9J0 566 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 ANO7Q6IWH7 933 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 CROCCP2Q86T23 111 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 SERPINA9Q86WD7 417 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 CXorf40AQ8TE69 158 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 FUBP1Q96AE4 644 aaKnown RBP24.96■■□□□ 1.59
SHMT1-207ENST00000580002 SPATA16Q9BXB7 569 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 DOCK9Q9BZ29 2069 aa24.96■■□□□ 1.59
SHMT1-207ENST00000580002 IQANK1A0A1B0GTG1 560 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 FAM47DPA6NHR8 397 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 FADS2P1A8MWK0 482 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 ALDOAP04075 364 aaKnown RBP24.95■■□□□ 1.59
SHMT1-207ENST00000580002 NFKBIAP25963 317 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 PMLP29590 882 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 SPRP35270 261 aaPredicted RBP24.95■■□□□ 1.59
SHMT1-207ENST00000580002 CD151P48509 253 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 PXNP49023 591 aaPredicted RBP24.95■■□□□ 1.59
SHMT1-207ENST00000580002 GYS2P54840 703 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 CSE1LP55060 971 aaKnown RBP24.95■■□□□ 1.59
SHMT1-207ENST00000580002 FGL2Q14314 439 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 DBN1Q16643 649 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 SNX20Q7Z614 316 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 SLC41A1Q8IVJ1 513 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 PGBD3Q8N328 593 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 DTD2Q96FN9 168 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 RHOJQ9H4E5 214 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 APPL1Q9UKG1 709 aa24.95■■□□□ 1.59
SHMT1-207ENST00000580002 H0Y858 1186 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 WNT9AO14904 365 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 PI15O43692 258 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 LZTS3O60299 673 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-207ENST00000580002 C7P10643 843 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 OGNP20774 298 aaKnown RBP24.95■■□□□ 1.58
SHMT1-207ENST00000580002 HPDP32754 393 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-207ENST00000580002 ACSL1P33121 698 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 SERPINB9P50453 376 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 TPMTP51580 245 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 SUOXP51687 545 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 ADPRHP54922 357 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 GPS2Q13227 327 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 PPM1JQ5JR12 505 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 ZNF648Q5T619 568 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-207ENST00000580002 HENMT1Q5T8I9 393 aaKnown RBP24.95■■□□□ 1.58
SHMT1-207ENST00000580002 KIAA0408Q6ZU52 694 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 SH2D5Q6ZV89 423 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 SDCCAG8Q86SQ7 713 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-207ENST00000580002 FRMD1Q8N878 549 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 PLEKHG4BQ96PX9 1271 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 NELL2Q99435 816 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 SLC39A10Q9ULF5 831 aa24.95■■□□□ 1.58
SHMT1-207ENST00000580002 TRBV5-4A0A0C4DH59 114 aa24.94■■□□□ 1.58
SHMT1-207ENST00000580002 PLRG1O43660 514 aaKnown RBP24.94■■□□□ 1.58
SHMT1-207ENST00000580002 AP1G1O43747 822 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms