RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FCRL5Q96RD9 977 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 FERMT1Q9BQL6 677 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 TRHDEQ9UKU6 1024 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 PACSIN2Q9UNF0 486 aaPredicted RBP23.77■■□□□ 1.4
SHMT1-206ENST00000579558 TMEM98Q9Y2Y6 226 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 WDFY3Q8IZQ1 3526 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 SRRM3A6NNA2 597 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 MIF4GDA9UHW6 222 aaKnown RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 TJP3O95049 919 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 TNNT3P45378 269 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 WNT3AP56704 352 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 EIF3EP60228 445 aaKnown RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 ILF3Q12906 894 aaKnown RBP eCLIP23.76■■□□□ 1.396e-6■□□□□ 10.2
SHMT1-206ENST00000579558 HENMT1Q5T8I9 393 aaKnown RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 KDELC1Q6UW63 502 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 CDKL3Q8IVW4 592 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 GPBAR1Q8TDU6 330 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 EID2BQ96D98 161 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 COX14Q96I36 57 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 CCDC3Q9BQI4 270 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 GSDMCQ9BYG8 508 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 GPR63Q9BZJ6 419 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 DPEP2Q9H4A9 486 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 TRNAU1APQ9NX07 287 aaKnown RBP23.76■■□□□ 1.39
SHMT1-206ENST00000579558 DKK4Q9UBT3 224 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 RSPH14Q9UHP6 348 aa23.76■■□□□ 1.39
SHMT1-206ENST00000579558 RP1P56715 2156 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 B4DGG1 531 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 TAF4O00268 1085 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 MARK2Q7KZI7 788 aaKnown RBP23.75■■□□□ 1.39
SHMT1-206ENST00000579558 GPR156Q8NFN8 814 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 CCDC74AQ96AQ1 378 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 OXNAD1Q96HP4 312 aaPredicted RBP23.75■■□□□ 1.39
SHMT1-206ENST00000579558 SRPK1Q96SB4 655 aaKnown RBP23.75■■□□□ 1.39
SHMT1-206ENST00000579558 FAM118BQ9BPY3 351 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 NRSN2Q9GZP1 204 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 GPSM3Q9Y4H4 160 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 ADGRG1Q9Y653 693 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 CAPN6Q9Y6Q1 641 aa23.75■■□□□ 1.39
SHMT1-206ENST00000579558 FADS2P1A8MWK0 482 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 CSO75390 466 aaKnown RBP23.74■■□□□ 1.39
SHMT1-206ENST00000579558 ASMTLO95671 621 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 PTMAP06454 111 aaKnown RBP23.74■■□□□ 1.39
SHMT1-206ENST00000579558 RBP3P10745 1247 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 ADCY8P40145 1251 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 ALS2CLQ60I27 953 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 OGFOD3Q6PK18 319 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 TMC3Q7Z5M5 1100 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 NRROSQ86YC3 692 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 IPMKQ8NFU5 416 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 OR6C4Q8NGE1 309 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 SCARF2Q96GP6 870 aaPredicted RBP23.74■■□□□ 1.39
SHMT1-206ENST00000579558 OR2M4Q96R27 311 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 TSGA10Q9BZW7 698 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 CDH19Q9H159 772 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 SYNDIG1Q9H7V2 258 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 RAD18Q9NS91 495 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 PCDHB1Q9Y5F3 818 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 SPO11Q9Y5K1 396 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 AK5Q9Y6K8 562 aa23.74■■□□□ 1.39
SHMT1-206ENST00000579558 FREM2Q5SZK8 3169 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 LOC285095A0A1B0GVY8 99 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 DDX3YO15523 660 aaKnown RBP23.73■■□□□ 1.39
SHMT1-206ENST00000579558 NOBOXO60393 691 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 AK4P27144 223 aaPredicted RBP23.73■■□□□ 1.39
SHMT1-206ENST00000579558 CTBSQ01459 385 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 MPP3Q13368 585 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 RTP5Q14D33 572 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 C14orf28Q4W4Y0 310 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 ITPRIPL1Q6GPH6 555 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 DARS2Q6PI48 645 aaKnown RBP23.73■■□□□ 1.39
SHMT1-206ENST00000579558 SFTPA2Q8IWL1 248 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 SLC25A41Q8N5S1 370 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 RNF10Q8N5U6 811 aaKnown RBP23.73■■□□□ 1.39
SHMT1-206ENST00000579558 WDR48Q8TAF3 677 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 MRGPRX2Q96LB1 330 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 SPATA16Q9BXB7 569 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 GBA3Q9H227 469 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 SPATS2LQ9NUQ6 558 aaKnown RBP23.73■■□□□ 1.39
SHMT1-206ENST00000579558 TAAR2Q9P1P5 351 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 RABGEF1Q9UJ41 708 aa23.73■■□□□ 1.39
SHMT1-206ENST00000579558 CNOT6Q9ULM6 557 aaKnown RBP23.73■■□□□ 1.39
SHMT1-206ENST00000579558 KCNN4O15554 427 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 ARHGAP6O43182 974 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 STK10O94804 968 aaKnown RBP23.72■■□□□ 1.39
SHMT1-206ENST00000579558 EPOP01588 193 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 ATP1A1P05023 1023 aaKnown RBP23.72■■□□□ 1.39
SHMT1-206ENST00000579558 CHRNA4P43681 627 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 DCDC1P59894 354 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 PYCR3Q53H96 274 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 SIRPB2Q5JXA9 342 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 SLC30A9Q6PML9 568 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 RBM44Q6ZP01 1051 aaKnown RBP23.72■■□□□ 1.39
SHMT1-206ENST00000579558 GALNT13Q8IUC8 556 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 GPR26Q8NDV2 337 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 CCDC112Q8NEF3 446 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 VPS18Q9P253 973 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 GUCA1BQ9UMX6 200 aa23.72■■□□□ 1.39
SHMT1-206ENST00000579558 OAS3Q9Y6K5 1087 aaKnown RBP23.72■■□□□ 1.39
SHMT1-206ENST00000579558 ARHGEF17Q96PE2 2063 aaPredicted RBP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms