RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TXKP42681 527 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 CLK3P49761 638 aaKnown RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 TPD52P55327 224 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 CBX3Q13185 183 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 HYAL4Q2M3T9 481 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 TYSND1Q2T9J0 566 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 PRSS36Q5K4E3 855 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 JADE1Q6IE81 842 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 DRICH1Q6PGQ1 229 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 GLDNQ6ZMI3 551 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 CLNKQ7Z7G1 428 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 ELOA2Q8IYF1 753 aaPredicted RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 GHDCQ8N2G8 530 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 CPXM2Q8N436 756 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 FAM109AQ8N4B1 249 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 MB21D1Q8N884 522 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 XXYLT1Q8NBI6 393 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 C11orf65Q8NCR3 313 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 OR56A1Q8NGH5 318 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 OR52N2Q8NGI0 321 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 SNX19Q92543 992 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 GLG1Q92896 1179 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 MAP4K1Q92918 833 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 PTERQ96BW5 349 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 FAM136AQ96C01 138 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 EDC3Q96F86 508 aaKnown RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 TMEM176AQ96HP8 235 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 HS6ST2Q96MM7 605 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 KIFC3Q9BVG8 833 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 IFIH1Q9BYX4 1025 aaKnown RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 C12orf65Q9H3J6 166 aaKnown RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 HRH4Q9H3N8 390 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 NSUN3Q9H649 340 aaKnown RBP5.89□□□□□ -1.47
VPS53-219ENST00000576019 SETD4Q9NVD3 440 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 ARHGEF38Q9NXL2 777 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 KIAA1456Q9P272 454 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 SH3BGRL2Q9UJC5 107 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 ZHX2Q9Y6X8 837 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 UMODL1Q5DID0 1318 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 PTPRSQ13332 1948 aa5.89□□□□□ -1.47
VPS53-219ENST00000576019 NF1P21359 2839 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 A0A1B0GTW7 788 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 A0A1W2PRV1 198 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 SPRY2O43597 315 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 TRIAP1O43715 76 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 HS6ST1O60243 411 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 CCNT1O60563 726 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 USP12O75317 370 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 ZFPL1O95159 310 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 FYNP06241 537 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 HOXC6P09630 235 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 SP9P0CG40 484 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 PTPN2P17706 415 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 ERCC2P18074 760 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 TRIM21P19474 475 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 RFC1P35251 1148 aaPredicted RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 GNAQP50148 359 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 GALCP54803 685 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 SLC12A3P55017 1021 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 RAE1P78406 368 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 RPA4Q13156 261 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 DYRK1AQ13627 763 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 MORF4L2Q15014 288 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 MTHFSDQ2M296 383 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 GLRA4Q5JXX5 417 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 CC2D1BQ5T0F9 858 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 ATG9BQ674R7 924 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 RBPMS2Q6ZRY4 209 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 MOB3CQ70IA8 216 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 PLEKHH3Q7Z736 793 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 FAM160B2Q86V87 743 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 DTX1Q86Y01 620 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 TP53INP2Q8IXH6 220 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 GPR135Q8IZ08 494 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 MMP21Q8N119 569 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 KLHL36Q8N4N3 616 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 PI4KAP1Q8N8J0 262 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 ENDOVQ8N8Q3 282 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 OR52L2PQ8NGH6 319 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 GLMPQ8WWB7 406 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 LINC00615Q96LM1 132 aaPredicted RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 IWS1Q96ST2 819 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 DPYSL5Q9BPU6 564 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 RTP3Q9BQQ7 232 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 MFSD1Q9H3U5 465 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 KIF9Q9HAQ2 790 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 TRIM36Q9NQ86 728 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 MBNL1Q9NR56 388 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 SLC6A13Q9NSD5 602 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 BABAM1Q9NWV8 329 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 DLGAP2Q9P1A6 1054 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 UPB1Q9UBR1 384 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 AMACRQ9UHK6 382 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 HAO1Q9UJM8 370 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 OSGIN1Q9UJX0 560 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 A4GNTQ9UNA3 340 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 KCNK7Q9Y2U2 307 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.88□□□□□ -1.47
VPS53-219ENST00000576019 PCNX1Q96RV3 2341 aa5.88□□□□□ -1.47
VPS53-219ENST00000576019 ASXL3Q9C0F0 2248 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms