RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SLC22A9Q8IVM8 553 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 WDR75Q8IWA0 830 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 LRRC34Q8IZ02 419 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 NRSN1Q8IZ57 195 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 UNC5BQ8IZJ1 945 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 TTC30BQ8N4P2 665 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 GPATCH11Q8N954 259 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 OR2A12Q8NGT7 310 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 GDAP1Q8TB36 358 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 OR8D1Q8WZ84 308 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 RAB7BQ96AH8 199 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SEC16BQ96JE7 1060 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ELMO2Q96JJ3 720 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 DNAJC1Q96KC8 554 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 RPL10LQ96L21 214 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 C7orf26Q96N11 449 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ASB2Q96Q27 587 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 MCCC1Q96RQ3 725 aaPredicted RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 KLF6Q99612 283 aaPredicted RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 OMDQ99983 421 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 TRIM56Q9BRZ2 755 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 TRMT61BQ9BVS5 477 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 TSSK1BQ9BXA7 367 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 C1QTNF2Q9BXJ5 285 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CIPCQ9C0C6 399 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 S1PR5Q9H228 398 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 MRPL46Q9H2W6 279 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 STN1Q9H668 368 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 FBRSQ9HAH7 460 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 UGT1A7Q9HAW7 530 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 UGT1A10Q9HAW8 530 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 UGT1A8Q9HAW9 530 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 GPAMQ9HCL2 828 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 NFKBIL1Q9UBC1 381 aaPredicted RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 EPS15L1Q9UBC2 864 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 COPG2Q9UBF2 871 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 LIMD1Q9UGP4 676 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SLC2A6Q9UGQ3 507 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ARL2BPQ9Y2Y0 163 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 USP15Q9Y4E8 981 aaPredicted RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 PSAT1Q9Y617 370 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ARL5AQ9Y689 179 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 TTC28Q96AY4 2481 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 PTPRSQ13332 1948 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 PLXNA4Q9HCM2 1894 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 GLYATL1P3A0A0U1RQE8 302 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 C1orf232A0A0U1RR37 186 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 TBC1D3BA6NDS4 549 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SYCE1LA8MT33 242 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 C1QTNF3-AMACRE9PGA6 284 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 K7ERQ8 282 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SCAMP3O14828 347 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 KPNA5O15131 536 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 TRIM13O60858 407 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 RNASEH1O60930 286 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 ZNF821O75541 412 aaPredicted RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 PIAS1O75925 651 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 DCTN3O75935 186 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 HAUS5O94927 633 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 PROCP04070 461 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 APODP05090 189 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SERPINE1P05121 402 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 MYL2P10916 166 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 RALBP11234 206 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 PKMP14618 531 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 GLULP15104 373 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 RPS3P23396 243 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS39-213ENST00000570062 GABRB3P28472 473 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 VIPR1P32241 457 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 MC4RP32245 332 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SLC8A1P32418 973 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 HNF1BP35680 557 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SPAM1P38567 509 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 VIPR2P41587 438 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 DCDC1P59894 354 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 DNAJB13P59910 316 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 TMPRSS15P98073 1019 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 ELAVL3Q14576 367 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 COL19A1Q14993 1142 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 GEN1Q17RS7 908 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 N4BP2L1Q5TBK1 243 aaPredicted RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 SDE2Q6IQ49 451 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 DPY19L3Q6ZPD9 716 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 TRMT11Q7Z4G4 463 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 SPRED2Q7Z698 418 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 NLRP8Q86W28 1048 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 DENND6AQ8IWF6 608 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 RBFAQ8N0V3 343 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 AFAP1L2Q8N4X5 818 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 TERB1Q8NA31 727 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 MDGA1Q8NFP4 955 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 RHEBL1Q8TAI7 183 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 CSGALNACT1Q8TDX6 532 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 FRS2Q8WU20 508 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SUSD6Q92537 303 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 KCNJ9Q92806 393 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 MRGPRX3Q96LB0 322 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 AARSD1Q9BTE6 412 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 TRMOQ9BU70 441 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 TNKS2Q9H2K2 1166 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms