RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 MT-CO3P00414 261 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 RBP3P10745 1247 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 CETN2P41208 172 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 GNPDA1P46926 289 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 WNT3AP56704 352 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 EIF3EP60228 445 aaKnown RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 DOK6Q6PKX4 331 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 TMC3Q7Z5M5 1100 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 TAF8Q7Z7C8 310 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 NRROSQ86YC3 692 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 CDKL3Q8IVW4 592 aaPredicted RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 GPR26Q8NDV2 337 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 CCDC112Q8NEF3 446 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 GPR156Q8NFN8 814 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 MDM1Q8TC05 714 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 MAPK15Q8TD08 544 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 GPBAR1Q8TDU6 330 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 NAT6Q93015 286 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 SCARF2Q96GP6 870 aaPredicted RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 HIC2Q96JB3 615 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 MRGPRX2Q96LB1 330 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 TSGA10Q9BZW7 698 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 GBA3Q9H227 469 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 FAM83DQ9H4H8 585 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 CCDC86Q9H6F5 360 aaKnown RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 SUDS3Q9H7L9 328 aaPredicted RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 TRNAU1APQ9NX07 287 aaKnown RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 NFKBIL1Q9UBC1 381 aaPredicted RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 GULP1Q9UBP9 304 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 RSPH14Q9UHP6 348 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 CNOT6Q9ULM6 557 aaKnown RBP12.96□□□□□ -0.33
CNOT1-220ENST00000569916 PADI4Q9UM07 663 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 SHOC2Q9UQ13 582 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 TMEM98Q9Y2Y6 226 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 SPO11Q9Y5K1 396 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 ST14Q9Y5Y6 855 aa12.96□□□□□ -0.33
CNOT1-220ENST00000569916 TAF4O00268 1085 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 CASC3O15234 703 aaKnown RBP12.95□□□□□ -0.34
CNOT1-220ENST00000569916 KRT86O43790 486 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 NOBOXO60393 691 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 EPOP01588 193 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 SLC4A1P02730 911 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 CHRNA4P43681 627 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 DCDC1P59894 354 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 KLF1Q13351 362 aaPredicted RBP12.95□□□□□ -0.34
CNOT1-220ENST00000569916 MPP3Q13368 585 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 SIRPB2Q5JXA9 342 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 CCDC70Q6NSX1 233 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 OGFOD3Q6PK18 319 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 PROSER1Q86XN7 944 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 SFTPA2Q8IWL1 248 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 NXPE2Q96DL1 559 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 SRPK1Q96SB4 655 aaKnown RBP12.95□□□□□ -0.34
CNOT1-220ENST00000569916 CCDC3Q9BQI4 270 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 GSDMCQ9BYG8 508 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 GPR63Q9BZJ6 419 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 DKK4Q9UBT3 224 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 RABGEF1Q9UJ41 708 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 GUCA1BQ9UMX6 200 aa12.95□□□□□ -0.34
CNOT1-220ENST00000569916 OAS3Q9Y6K5 1087 aaKnown RBP12.95□□□□□ -0.34
CNOT1-220ENST00000569916 FREM2Q5SZK8 3169 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 B4DGG1 531 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 AURKAO14965 403 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 KCNN4O15554 427 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 AK4P27144 223 aaPredicted RBP12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ADCY8P40145 1251 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 CCZ1BP86790 482 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 CCZ1P86791 482 aaPredicted RBP12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ILF3Q12906 894 aaKnown RBP eCLIP12.94□□□□□ -0.347e-7■□□□□ 9.9
CNOT1-220ENST00000569916 SLC1A5Q15758 541 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ANKRD20A2Q5SQ80 823 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ANKRD20A1Q5TYW2 823 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ANKRD20A3Q5VUR7 823 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ALS2CLQ60I27 953 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ITPRIPL1Q6GPH6 555 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 DARS2Q6PI48 645 aaKnown RBP12.94□□□□□ -0.34
CNOT1-220ENST00000569916 LRRC8AQ8IWT6 810 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 TTC30BQ8N4P2 665 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 SLC25A41Q8N5S1 370 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 FAM46DQ8NEK8 389 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 IPMKQ8NFU5 416 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 CCDC74AQ96AQ1 378 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 SPATA13Q96N96 652 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 OR2M4Q96R27 311 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 CDH19Q9H159 772 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 ABCG4Q9H172 646 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 SPATS2LQ9NUQ6 558 aaKnown RBP12.94□□□□□ -0.34
CNOT1-220ENST00000569916 TAAR2Q9P1P5 351 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 VPS18Q9P253 973 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 PCDHB1Q9Y5F3 818 aa12.94□□□□□ -0.34
CNOT1-220ENST00000569916 PCYT1BQ9Y5K3 369 aaPredicted RBP12.94□□□□□ -0.34
CNOT1-220ENST00000569916 TCRBV7S2A1N4TA0A589 114 aa12.93□□□□□ -0.34
CNOT1-220ENST00000569916 GOLGA6L9A6NEM1 432 aa12.93□□□□□ -0.34
CNOT1-220ENST00000569916 SRRM3A6NNA2 597 aaPredicted RBP12.93□□□□□ -0.34
CNOT1-220ENST00000569916 DNAJC6O75061 913 aa12.93□□□□□ -0.34
CNOT1-220ENST00000569916 CSO75390 466 aaKnown RBP12.93□□□□□ -0.34
CNOT1-220ENST00000569916 ATP1A1P05023 1023 aaKnown RBP12.93□□□□□ -0.34
CNOT1-220ENST00000569916 FGF1P05230 155 aa12.93□□□□□ -0.34
CNOT1-220ENST00000569916 BPIP17213 487 aa12.93□□□□□ -0.34
CNOT1-220ENST00000569916 HLA-DPA1P20036 260 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms