RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ZRANB3Q5FWF4 1079 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 ZNF678Q5SXM1 525 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 REP15Q6BDI9 236 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 KIAA1841Q6NSI8 718 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 IFNEQ86WN2 208 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 SPDYE1Q8NFV5 336 aaPredicted RBP8.74□□□□□ -1.01
LINC00558-201ENST00000569422 LILRB1Q8NHL6 650 aaPredicted RBP8.74□□□□□ -1.01
LINC00558-201ENST00000569422 HMGCLL1Q8TB92 370 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 PAWRQ96IZ0 340 aaKnown RBP8.74□□□□□ -1.01
LINC00558-201ENST00000569422 UBXN10Q96LJ8 280 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 HBEGFQ99075 208 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 VCX3BQ9H321 246 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 PSMD13Q9UNM6 376 aa8.74□□□□□ -1.01
LINC00558-201ENST00000569422 A0A1W2PQ45 241 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 A0A1W2PQY0 241 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SLC38A8A6NNN8 435 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 MRASO14807 208 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PIP5K1BO14986 540 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 TPST1O60507 370 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 NBNO60934 754 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 VNN2O95498 520 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PYGLP06737 847 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 C7P10643 843 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 ATP6V1B1P15313 513 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 ITGB6P18564 788 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 ATF6P18850 670 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CHRM3P20309 590 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 IMPDH1P20839 514 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PSMA3P25788 255 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 ATP5C1P36542 298 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 OXCT1P55809 520 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 STX1BP61266 288 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 GNA12Q03113 381 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CAPRIN1Q14444 709 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PDK3Q15120 406 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 TSNQ15631 228 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 MAP7D1Q3KQU3 841 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 VPS26BQ4G0F5 336 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CMPK2Q5EBM0 449 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 C6orf52Q5T4I8 152 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 IL23RQ5VWK5 629 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 KIAA1614Q5VZ46 1190 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 FAM45BPQ6NSW5 357 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 LRRC8DQ7L1W4 858 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 TAS2R42Q7RTR8 314 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 TMCO2Q7Z6W1 182 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 AMIGO2Q86SJ2 522 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SETD3Q86TU7 594 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 TMEM151BQ8IW70 566 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 KLHDC8BQ8IXV7 354 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 LILRA2Q8N149 483 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CPSF7Q8N684 471 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 FAM45AQ8TCE6 357 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 TUBGCP3Q96CW5 907 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CDKN2AIPNLQ96HQ2 116 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 AKTIPQ9H8T0 292 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 MARCH5Q9NX47 278 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RNF112Q9ULX5 631 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PRPF19Q9UMS4 504 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 LOC285095A0A1B0GVY8 99 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CDC7O00311 574 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 FBP2O00757 339 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 BNIP3LO60238 219 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SNAP91O60641 907 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PRAMEF11O60813 436 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RPP40O75818 363 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RTN3O95197 1032 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 BMP1P13497 986 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CD1DP15813 335 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 EEF1DP29692 281 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 POLD2P49005 469 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 AGTR2P50052 363 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PLIN5Q00G26 463 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 GRB7Q14451 532 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PTPRNQ16849 979 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PARP15Q460N3 678 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SPOUT1Q5T280 376 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RAB44Q7Z6P3 723 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SLC22A9Q8IVM8 553 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SLC7A5P1Q8MH63 180 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 BRSK1Q8TDC3 778 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 BCL7CQ8WUZ0 217 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CCDC126Q96EE4 140 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 C19orf60Q96EN9 201 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 ASIC4Q96FT7 647 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RPL10LQ96L21 214 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 ZNF385DQ9H6B1 395 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CACNA2D2Q9NY47 1150 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 UBA2Q9UBT2 640 aaPredicted RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 EGFL7Q9UHF1 273 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SNX13Q9Y5W8 968 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PRORSD1PA6NEY8 169 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 CCDC160A6NGH7 325 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 BTN3A1O00481 513 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SYN3O14994 580 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 PQBP1O60828 265 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 NIPSNAP2O75323 286 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RPLP2P05387 115 aaKnown RBP8.73□□□□□ -1.01
LINC00558-201ENST00000569422 RHOCP08134 193 aa8.73□□□□□ -1.01
LINC00558-201ENST00000569422 SNRPB2P08579 225 aaKnown RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms