RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SSH3Q8TE77 659 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PIGOQ8TEQ8 1089 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LPGAT1Q92604 370 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MARC2Q969Z3 335 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LRRC59Q96AG4 307 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 TMEM125Q96AQ2 219 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 NMD3Q96D46 503 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 PTCD3Q96EY7 689 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 CHMP6Q96FZ7 201 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SUCLG2Q96I99 432 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ZC3H10Q96K80 434 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 TCEANC2Q96MN5 208 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ZNF641Q96N77 438 aaPredicted RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 ZIM3Q96PE6 472 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MYD88Q99836 296 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DDX50Q9BQ39 737 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 NTMT1Q9BV86 223 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 C1QTNF7Q9BXJ2 289 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TLR10Q9BXR5 811 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ANKRD2Q9GZV1 360 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 LHX5Q9H2C1 402 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DPH5Q9H2P9 285 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PABPC3Q9H361 631 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 CCDC134Q9H6E4 229 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 AZI2Q9H6S1 392 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DCLRE1BQ9H816 532 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KCNK13Q9HB14 408 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KIAA1586Q9HCI6 787 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 S100A14Q9HCY8 104 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 NLRC4Q9NPP4 1024 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GLRX2Q9NS18 164 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TXLNGQ9NUQ3 528 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SLC38A7Q9NVC3 462 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 SYBUQ9NX95 663 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 MCM9Q9NXL9 1143 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DACT1Q9NYF0 836 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 NCKIPSDQ9NZQ3 722 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 FAM30AQ9NZY2 134 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CPNE7Q9UBL6 633 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GIMAP2Q9UG22 337 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 FETUBQ9UGM5 382 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CYB5R1Q9UHQ9 305 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KCNE5Q9UJ90 142 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PACSIN3Q9UKS6 424 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DIMT1Q9UNQ2 313 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 B3GNT3Q9Y2A9 372 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 DERAQ9Y315 318 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 TMX2Q9Y320 296 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 RBMX2Q9Y388 322 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 UTP11Q9Y3A2 253 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 CFAP20Q9Y6A4 193 aaKnown RBP3.28□□□□□ -1.88
VPS35-208ENST00000568612 PIAS3Q9Y6X2 628 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 KDM6BO15054 1643 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CAMSAP1Q5T5Y3 1602 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ADCY10Q96PN6 1610 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 CC2D2AQ9P2K1 1620 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS35-208ENST00000568612 TAF1LQ8IZX4 1826 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 ERVK-7P63135 1459 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 GRIN2BQ13224 1484 aa3.28□□□□□ -1.88
VPS35-208ENST00000568612 PLCH2O75038 1416 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 NOS1P29475 1434 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 C9orf84Q5VXU9 1444 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRAPPC8Q9Y2L5 1435 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CRYBG1Q9Y4K1 1723 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ADCY9O60503 1353 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PBRM1Q86U86 1689 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CLUHO75153 1309 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRGV11A0A075B6L2 103 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ESYT2A0FGR8 921 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SYNDIG1LA6NDD5 238 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 LRRIQ4A6NIV6 560 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MARCH11A6NNE9 402 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 EVPLLA8MZ36 301 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 hCG_2039718K7EN88 272 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RNF103O00237 685 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CDH16O75309 829 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRMUO75648 421 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 SURF6O75683 361 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 PALMO75781 387 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RBBP9O75884 186 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SULT1C4O75897 302 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ATP5HO75947 161 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRIM16O95361 564 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZBTB11O95625 1053 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 SNAP29O95721 258 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 NUDT3O95989 172 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 IL6P05231 212 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RB1P06400 928 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 S100A9P06702 114 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 HMOX1P09601 288 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 HSMCR30P0CW71 290 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ACTN1P12814 892 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CHN1P15882 459 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 NPR1P16066 1061 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 STMN1P16949 149 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 HOXB8P17481 243 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 ARF4P18085 180 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 MALP21145 153 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 FDXRP22570 491 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms