RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PYCR3Q53H96 274 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 SLC9B2Q86UD5 537 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 TRIM74Q86UV6 250 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 GALNT13Q8IUC8 556 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 NTAN1Q96AB6 310 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 C19orf60Q96EN9 201 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 ACTL8Q9H568 366 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 SARS2Q9NP81 518 aaKnown RBP16.06■□□□□ 0.16
CLK3-223ENST00000568488 CNOT8Q9UFF9 292 aaKnown RBP16.06■□□□□ 0.16
CLK3-223ENST00000568488 ZNHIT2Q9UHR6 403 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 ZNF451Q9Y4E5 1061 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 PCDHGA6Q9Y5G7 932 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 TTC24A2A3L6 582 aaPredicted RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 C2CD4BA6NLJ0 364 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 WASH4PA8MWX3 477 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 BIN1O00499 593 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 TRAFD1O14545 582 aaPredicted RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 SNX2O60749 519 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 DPM1O60762 260 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 SPAG6O75602 509 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 ASMTLO95671 621 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 LSM8O95777 96 aaKnown RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 MMEP08473 750 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 VARSP26640 1264 aaKnown RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 LEPRP48357 1165 aaKnown RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 PAPOLAP51003 745 aaKnown RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 GFERP55789 205 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 CHST15Q7LFX5 561 aaPredicted RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 SLC34A3Q8N130 599 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 LZTR1Q8N653 840 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 Q8NA96 180 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 THAP4Q8WY91 577 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 CENPIQ92674 756 aaPredicted RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 MARVELD3Q96A59 401 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 SCARF2Q96GP6 870 aaPredicted RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 C9orf72Q96LT7 481 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.05■□□□□ 0.16
CLK3-223ENST00000568488 ING2Q9H160 280 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 MLXIPLQ9NP71 852 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 LHX9Q9NQ69 397 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 TBC1D29Q9UFV1 150 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 CD84Q9UIB8 345 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 PRKAB1Q9Y478 270 aa16.05■□□□□ 0.16
CLK3-223ENST00000568488 MT-ND3P03897 115 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 ANKRD34CP0C6C1 535 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 PRF1P14222 555 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 TYRP1P17643 537 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 NFKBIAP25963 317 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 PTPN9P43378 593 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 NDST2P52849 883 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 EPHA4P54764 986 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 RPS18P62269 152 aaKnown RBP16.04■□□□□ 0.16
CLK3-223ENST00000568488 NOMO3P69849 1222 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 LRP8Q14114 963 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 IL11RAQ14626 422 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 CHRNA6Q15825 494 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 IYDQ6PHW0 289 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 NOP9Q86U38 636 aaKnown RBP16.04■□□□□ 0.16
CLK3-223ENST00000568488 NSMCE3Q96MG7 304 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 TGM7Q96PF1 710 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 RUFY1Q96T51 708 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 SLC39A8Q9C0K1 460 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 LRRC19Q9H756 370 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 SP110Q9HB58 689 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 PCDHGC4Q9Y5F7 938 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 ATP6V1DQ9Y5K8 247 aa16.04■□□□□ 0.16
CLK3-223ENST00000568488 GTPBP10A4D1E9 387 aaKnown RBP16.03■□□□□ 0.16
CLK3-223ENST00000568488 ARHGAP42A6NI28 874 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 C21orf140B9A014 251 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 HNRNPRO43390 633 aaKnown RBP16.03■□□□□ 0.16
CLK3-223ENST00000568488 RASSF9O75901 435 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 CBX6O95503 412 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 CYP2A6P11509 494 aaPredicted RBP16.03■□□□□ 0.16
CLK3-223ENST00000568488 TEAD1P28347 426 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 NSUN2Q08J23 767 aaKnown RBP eCLIP16.03■□□□□ 0.16
CLK3-223ENST00000568488 ELOAQ14241 798 aaKnown RBP16.03■□□□□ 0.16
CLK3-223ENST00000568488 PTPRRQ15256 657 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 UGT8Q16880 541 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 ZRANB3Q5FWF4 1079 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 SMYD5Q6GMV2 418 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 FAM199XQ6PEV8 388 aaPredicted RBP16.03■□□□□ 0.16
CLK3-223ENST00000568488 RFLNAQ6ZTI6 216 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 SEC14L1Q92503 715 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 EPB41L1Q9H4G0 881 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 KCNK6Q9Y257 313 aa16.03■□□□□ 0.16
CLK3-223ENST00000568488 MN1Q10571 1320 aaPredicted RBP16.02■□□□□ 0.16
CLK3-223ENST00000568488 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.02■□□□□ 0.16
CLK3-223ENST00000568488 FGF10O15520 208 aaPredicted RBP16.02■□□□□ 0.16
CLK3-223ENST00000568488 CPP00450 1065 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 KRT3P12035 628 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 AMD1P17707 334 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 LHCGRP22888 699 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 MTIF2P46199 727 aaKnown RBP16.02■□□□□ 0.16
CLK3-223ENST00000568488 TPI1P60174 286 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 AP1S1P61966 158 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 PAPD7Q5XG87 772 aaKnown RBP16.02■□□□□ 0.16
CLK3-223ENST00000568488 SLC6A19Q695T7 634 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 ADAMTSL4Q6UY14 1074 aa16.02■□□□□ 0.16
CLK3-223ENST00000568488 ZC3H18Q86VM9 953 aaKnown RBP16.02■□□□□ 0.16
CLK3-223ENST00000568488 PPP1R3BQ86XI6 285 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms