RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 COQ10AQ96MF6 247 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 KLF6Q99612 283 aaPredicted RBP17.21■□□□□ 0.35
CLN3-217ENST00000565354 TBL1YQ9BQ87 522 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 APOL2Q9BQE5 337 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 LRRC40Q9H9A6 602 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 ZFYVE1Q9HBF4 777 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 MAGEE1Q9HCI5 957 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 MBNL1Q9NR56 388 aaKnown RBP17.21■□□□□ 0.35
CLN3-217ENST00000565354 SHOC2Q9UQ13 582 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 ZNF711Q9Y462 761 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 AK5Q9Y6K8 562 aa17.21■□□□□ 0.35
CLN3-217ENST00000565354 DOCK9Q9BZ29 2069 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 LRRK1Q38SD2 2015 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 A0A0U1RQS6 177 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 PHF2O75151 1096 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 CHRNA4P43681 627 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 STC1P52823 247 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 CLDN6P56747 220 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 NXPH1P58417 271 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 MTM1Q13496 603 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 PTK2BQ14289 1009 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 SPARCL1Q14515 664 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 C4orf22Q6V702 233 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 Q6ZVL8 140 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 LYSMD3Q7Z3D4 306 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 ABI3BPQ7Z7G0 1075 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 PRUNE1Q86TP1 453 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 GATAD2AQ86YP4 633 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 OXR1Q8N573 874 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 GRK7Q8WTQ7 553 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 DTD2Q96FN9 168 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 C16orf45Q96MC5 204 aaPredicted RBP17.2■□□□□ 0.34
CLN3-217ENST00000565354 GORASP1Q9BQQ3 440 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 TRABDQ9H4I3 376 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 RAB6BQ9NRW1 208 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 HACD3Q9P035 362 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 CD84Q9UIB8 345 aa17.2■□□□□ 0.34
CLN3-217ENST00000565354 TOR1BO14657 336 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 RFPL3O75679 317 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 LDOC1O95751 146 aaPredicted RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 ZSCAN5DPP0CG00 497 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 COILP38432 576 aaPredicted RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 YPEL5P62699 121 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 BASP1P80723 227 aaKnown RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 PTSQ03393 145 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 TARDBPQ13148 414 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-217ENST00000565354 DNAJC3Q13217 504 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 PDE1CQ14123 709 aaPredicted RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 INPP5AQ14642 412 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 RTP5Q14D33 572 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 RAET1GQ6H3X3 334 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 CCDC137Q6PK04 289 aaKnown RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 GLT6D1Q7Z4J2 308 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 SNIP1Q8TAD8 396 aaKnown RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 AP2M1Q96CW1 435 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 CNDP2Q96KP4 475 aaKnown RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 ELF4Q99607 663 aaPredicted RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 NRSN2Q9GZP1 204 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 ETNK1Q9HBU6 452 aa17.19■□□□□ 0.34
CLN3-217ENST00000565354 FEZ2Q9UHY8 353 aaPredicted RBP17.19■□□□□ 0.34
CLN3-217ENST00000565354 TEX51A0A1B0GUA7 166 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 ERI2A8K979 691 aaKnown RBP17.18■□□□□ 0.34
CLN3-217ENST00000565354 CACNB4O00305 520 aaPredicted RBP17.18■□□□□ 0.34
CLN3-217ENST00000565354 USP12O75317 370 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 AP2A1O95782 977 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 GAS8O95995 478 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 TSHRP16473 764 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 GM2AP17900 193 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 HTR1BP28222 390 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 RPL22P35268 128 aaKnown RBP17.18■□□□□ 0.34
CLN3-217ENST00000565354 GPR1P46091 355 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 FNTAP49354 379 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 ARRB1P49407 418 aaPredicted RBP17.18■□□□□ 0.34
CLN3-217ENST00000565354 ACADVLP49748 655 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 CYP1B1Q16678 543 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 PRAMEF14Q5SWL7 426 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 HES3Q5TGS1 186 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 ESRP1Q6NXG1 681 aaKnown RBP17.18■□□□□ 0.34
CLN3-217ENST00000565354 PPP1R21Q6ZMI0 780 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 TECPR1Q7Z6L1 1165 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 LINC00523Q86TU6 105 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 NRSN1Q8IZ57 195 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 RAD18Q9NS91 495 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 RNF14Q9UBS8 474 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 SPO11Q9Y5K1 396 aa17.18■□□□□ 0.34
CLN3-217ENST00000565354 KRT14P02533 472 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 PYGLP06737 847 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 ADRA1AP35348 466 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 VPS41P49754 854 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 PFN3P60673 137 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 OLIG2Q13516 323 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 TRIP13Q15645 432 aaPredicted RBP17.17■□□□□ 0.34
CLN3-217ENST00000565354 PNCKQ6P2M8 343 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 TTC27Q6P3X3 843 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 RANBP10Q6VN20 620 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 ZNF765Q7L2R6 523 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 GPR155Q7Z3F1 870 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 RAVER1Q8IY67 606 aaKnown RBP17.17■□□□□ 0.34
CLN3-217ENST00000565354 DNAAF3Q8N9W5 541 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 GLIS1Q8NBF1 620 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 268.2 ms