RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	PCDHB11	Q9Y5F2	797 aa		14.01	□□□□□ -0.17
TPM1-223	ENST00000560445	RNF215	Q9Y6U7	377 aa		14.01	□□□□□ -0.17
TPM1-223	ENST00000560445	UNC13C	Q8NB66	2214 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445		A0A1W2PQM1	296 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ANKRD66	B4E2M5	251 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	KCNK1	O00180	336 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	HGS	O14964	777 aa	Predicted RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	NVL	O15381	856 aa	Known RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	MAP3K6	O95382	1288 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ASMTL	O95671	621 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ADCY8	P40145	1251 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	CD86	P42081	329 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	PDX1	P52945	283 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	HADHB	P55084	474 aa	Known RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	DCDC1	P59894	354 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	GPLD1	P80108	840 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	CTBS	Q01459	385 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	VAC14	Q08AM6	782 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	NR1D2	Q14995	579 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ZNF569	Q5MCW4	686 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	PHF19	Q5T6S3	580 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC30A9	Q6PML9	568 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	SARM1	Q6SZW1	724 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	C17orf82	Q86X59	251 aa	Predicted RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	JAML	Q86YT9	394 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	CCDC170	Q8IYT3	715 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	PLD5	Q8N7P1	536 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	NAF1	Q96HR8	494 aa	Known RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	NSMCE3	Q96MG7	304 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	HERPUD2	Q9BSE4	406 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ZSCAN5A	Q9BUG6	496 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	RIOK2	Q9BVS4	552 aa	Known RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	TRIM5	Q9C035	493 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC25A51	Q9H1U9	297 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	EPB41L1	Q9H4G0	881 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ZFYVE1	Q9HBF4	777 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	CD84	Q9UIB8	345 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	LOXL2	Q9Y4K0	774 aa		14	□□□□□ -0.17
TPM1-223	ENST00000560445	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	14	□□□□□ -0.17
TPM1-223	ENST00000560445	LAMA5	O15230	3695 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	OR5K4	A6NMS3	321 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	FGF1	P05230	155 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	UGT1A5	P35504	534 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	CYLC1	P35663	651 aa	Predicted RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	NOP2	P46087	812 aa	Known RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	SPINT3	P49223	89 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	PPM1F	P49593	454 aa	Predicted RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	SKOR1	P84550	965 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	ZFP36L1	Q07352	338 aa	Known RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	C19orf57	Q0VDD7	668 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	PYCR3	Q53H96	274 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	ZDHHC20	Q5W0Z9	365 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	CCDC81	Q6ZN84	652 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	PHYKPL	Q8IUZ5	450 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	OR10G6	Q8NH81	332 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	IMP4	Q96G21	291 aa	Known RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	COX14	Q96I36	57 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	RBM41	Q96IZ5	413 aa	Known RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	VAT1	Q99536	393 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	MAGEE1	Q9HCI5	957 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	SPATS2L	Q9NUQ6	558 aa	Known RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	PISD	Q9UG56	409 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	RABGEF1	Q9UJ41	708 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	CELSR3	Q9NYQ7	3312 aa		13.99	□□□□□ -0.17
TPM1-223	ENST00000560445	COL27A1	Q8IZC6	1860 aa	Predicted RBP	13.99	□□□□□ -0.17
TPM1-223	ENST00000560445		A0A0A6YYK5	440 aa	Predicted RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	DUX1	O43812	170 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CLDN7	O95471	211 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	ECEL1	O95672	775 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	LIPC	P11150	499 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	ALDH4A1	P30038	563 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CETN2	P41208	172 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	FASLG	P48023	281 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CDK18	Q07002	472 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	NIPAL4	Q0D2K0	466 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	SQSTM1	Q13501	440 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	QPCT	Q16769	361 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	TAF1B	Q53T94	588 aa	Predicted RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	TFDP3	Q5H9I0	405 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	HENMT1	Q5T8I9	393 aa	Known RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	B3GNT8	Q7Z7M8	397 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	NRROS	Q86YC3	692 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	PELI3	Q8N2H9	469 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	TXLNB	Q8N3L3	684 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CCL4L1	Q8NHW4	92 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	SNRNP27	Q8WVK2	155 aa	Known RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	TFB1M	Q8WVM0	346 aa	Known RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	SLC39A7	Q92504	469 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	P3H4	Q92791	437 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	SCAMP4	Q969E2	229 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	LRRC45	Q96CN5	670 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	AHCYL2	Q96HN2	611 aa	Known RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	OLFM3	Q96PB7	478 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CCNL2	Q96S94	520 aa	Predicted RBP	13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	CHP1	Q99653	195 aa		13.98	□□□□□ -0.17
TPM1-223	ENST00000560445	GPR63	Q9BZJ6	419 aa		13.98	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms