RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 RFLNAQ6ZTI6 216 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 SYDE1Q6ZW31 735 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 PELI3Q8N2H9 469 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 GPR26Q8NDV2 337 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 COX14Q96I36 57 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 VPS35Q96QK1 796 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 CDC6Q99741 560 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 DUSP23Q9BVJ7 150 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 SPATA16Q9BXB7 569 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 FRMD8Q9BZ67 464 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-208ENST00000560427 SMOXQ9NWM0 555 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 VPS18Q9P253 973 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 PCOLCE2Q9UKZ9 415 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 SLC17A4Q9Y2C5 497 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 ADAMTS9Q9P2N4 1935 aa12.93□□□□□ -0.34
NEDD8-208ENST00000560427 PRSS38A1L453 326 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 TMEM202A6NGA9 273 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 GPR89AB7ZAQ6 455 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 TPP1O14773 563 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 AQP9O43315 295 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 CBFA2T3O75081 653 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 TNFP01375 233 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 IVLP07476 585 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 GPR89BP0CG08 455 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 DGKAP23743 735 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 ZNF140P52738 457 aaPredicted RBP12.92□□□□□ -0.34
NEDD8-208ENST00000560427 SARNPP82979 210 aaKnown RBP12.92□□□□□ -0.34
NEDD8-208ENST00000560427 IL9RQ01113 521 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 OLIG2Q13516 323 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 ITGA9Q13797 1035 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 SPARCL1Q14515 664 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 ELOCQ15369 112 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 PRAMEF14Q5SWL7 426 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 ALS2CLQ60I27 953 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 SYT10Q6XYQ8 523 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 GLRX5Q86SX6 157 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 PRUNE1Q86TP1 453 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 PHYKPLQ8IUZ5 450 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 DNAAF3Q8N9W5 541 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 ZNF548Q8NEK5 533 aaPredicted RBP12.92□□□□□ -0.34
NEDD8-208ENST00000560427 BAHD1Q8TBE0 780 aaPredicted RBP12.92□□□□□ -0.34
NEDD8-208ENST00000560427 TMEM131Q92545 1883 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 PEX13Q92968 403 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 PDXPQ96GD0 296 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 SCARF2Q96GP6 870 aaPredicted RBP12.92□□□□□ -0.34
NEDD8-208ENST00000560427 CAPZA3Q96KX2 299 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 LGR4Q9BXB1 951 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 RMI1Q9H9A7 625 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 FGF22Q9HCT0 170 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 CASS4Q9NQ75 786 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 NLGN3Q9NZ94 848 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 PCYOX1Q9UHG3 505 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 APPL1Q9UKG1 709 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 NEU2Q9Y3R4 380 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 ARL5AQ9Y689 179 aa12.92□□□□□ -0.34
NEDD8-208ENST00000560427 COL5A1P20908 1838 aaPredicted RBP12.92□□□□□ -0.34
NEDD8-208ENST00000560427 GLYATL1P3A0A0U1RQE8 302 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 HEATR9A2RTY3 570 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 FADS2P1A8MWK0 482 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 H7C0S8 307 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 SCAMP1O15126 338 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 SH3BP5O60239 455 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 NOVA1P51513 510 aaKnown RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 GPS1Q13098 491 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 PEX6Q13608 980 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 LVRNQ6Q4G3 990 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 NLRP9Q7RTR0 991 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 GATAD2AQ86YP4 633 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 HID1Q8IV36 788 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 TAB3Q8N5C8 712 aaPredicted RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 OR52K1Q8NGK4 314 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 OR4C6Q8NH72 309 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 RHBDD1Q8TEB9 315 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 SETD7Q8WTS6 366 aaKnown RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 OR1E3Q8WZA6 343 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 GLYATL1Q969I3 302 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 C16orf45Q96MC5 204 aaPredicted RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 RANBP9Q96S59 729 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 AGAP2Q99490 1192 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 LRRC61Q9BV99 259 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 DDX47Q9H0S4 455 aaKnown RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 BPIFA1Q9NP55 256 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 IL26Q9NPH9 171 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 EVA1BQ9NVM1 165 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 TRNAU1APQ9NX07 287 aaKnown RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 NCKIPSDQ9NZQ3 722 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 KLF15Q9UIH9 416 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 RIMKLBQ9ULI2 386 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 CNOT6Q9ULM6 557 aaKnown RBP12.91□□□□□ -0.34
NEDD8-208ENST00000560427 WDR87Q6ZQQ6 2873 aa12.91□□□□□ -0.34
NEDD8-208ENST00000560427 SCN8AQ9UQD0 1980 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 LMO7DNF2Z398 122 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 INPP4BO15327 924 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 LDB2O43679 373 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 SDC3O75056 442 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 KCNK5O95279 499 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 PRAMEF1O95521 474 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 CEACAM5P06731 702 aa12.9□□□□□ -0.34
NEDD8-208ENST00000560427 CTSEP14091 401 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms