RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TCRBV7S3A2A0A539 114 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 POM121BA6NF01 834 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 GOLGA8CPA6NN73 597 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 H0Y8X5 98 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 H7C0S8 307 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 ARHGAP33O14559 1287 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 GFRA3O60609 400 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 MGAT1P26572 445 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 TRIM23P36406 574 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 CTSKP43235 329 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 PRAMEP78395 509 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 CDK3Q00526 305 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 MSLNQ13421 630 aaPredicted RBP10.02□□□□□ -0.81
USP3-216ENST00000559873 HIF1AQ16665 826 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 GPR33Q49SQ1 333 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 AASDHQ4L235 1098 aaPredicted RBP10.02□□□□□ -0.81
USP3-216ENST00000559873 CCDC38Q502W7 563 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 CERCAMQ5T4B2 595 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 TSTD2Q5T7W7 516 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 DUPD1Q68J44 220 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 AFTPHQ6ULP2 937 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 FAM151BQ6UXP7 276 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 CCNJLQ8IV13 435 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 GABPB2Q8TAK5 448 aaPredicted RBP10.02□□□□□ -0.81
USP3-216ENST00000559873 BTN2A2Q8WVV5 523 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 GLYATL1Q969I3 302 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 EID2BQ96D98 161 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 LRRC39Q96DD0 335 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 FAM122AQ96E09 287 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 STAMBPL1Q96FJ0 436 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 DNAJC1Q96KC8 554 aaKnown RBP10.02□□□□□ -0.81
USP3-216ENST00000559873 BMFQ96LC9 184 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 VPS35Q96QK1 796 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 TTC1Q99614 292 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 LRRC1Q9BTT6 524 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 APOOQ9BUR5 198 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 EDEM2Q9BV94 578 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 TEX101Q9BY14 249 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 FOXP3Q9BZS1 431 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 ERVMER34-1Q9H9K5 563 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 FAM114A2Q9NRY5 505 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 GPR27Q9NS67 375 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 NLE1Q9NVX2 485 aaPredicted RBP10.02□□□□□ -0.81
USP3-216ENST00000559873 SMOXQ9NWM0 555 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 SYBUQ9NX95 663 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 KLQ9UEF7 1012 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 RAPGEFL1Q9UHV5 662 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 FKBPLQ9UIM3 349 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 CRLS1Q9UJA2 301 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 DMDP11532 3685 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 USP34Q70CQ2 3546 aa10.02□□□□□ -0.81
USP3-216ENST00000559873 A0A0U1RQS6 177 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 SPTY2D1-AS1A0A0U1RR47 76 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 FAM237BA0A1B0GVD1 139 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 LNP1A1A4G5 178 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 MROH6A6NGR9 719 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 PATE3B3GLJ2 98 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 GPR89AB7ZAQ6 455 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 CFAP99D6REC4 459 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 TNFRSF10CO14798 259 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 PFDN6O15212 129 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 BUD23O43709 281 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 SRP72O76094 671 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 WNT1P04628 370 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 GPR89BP0CG08 455 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 RALBP11234 206 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 ENGP17813 658 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 PGAM1P18669 254 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 IVDP26440 423 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 MC4RP32245 332 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 PPARGP37231 505 aaPredicted RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 MAGEA3P43357 314 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 CCT8P50990 548 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 DRG2P55039 364 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 MRPS25P82663 173 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 TMPRSS15P98073 1019 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 CACNG1Q06432 222 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 GTF2H3Q13889 308 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 CCDC6Q16204 474 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 KIF19Q2TAC6 998 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 INAVAQ3KP66 663 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 AARS2Q5JTZ9 985 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 LDLRAP1Q5SW96 308 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 PRR23CQ6ZRP0 262 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 CENPUQ71F23 418 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 SNX20Q7Z614 316 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 CAND1Q86VP6 1230 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 SLC22A18ASQ8N1D0 253 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 NOA1Q8NC60 698 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 PLA2G15Q8NCC3 412 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 OR56A4Q8NGH8 313 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 OR13C4Q8NGS5 318 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 GDAP1Q8TB36 358 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 HEXDCQ8WVB3 486 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 FUBP1Q96AE4 644 aaKnown RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 HIC2Q96JB3 615 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 TTC25Q96NG3 672 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 ELF4Q99607 663 aaPredicted RBP10.01□□□□□ -0.81
USP3-216ENST00000559873 KIFC1Q9BW19 673 aa10.01□□□□□ -0.81
USP3-216ENST00000559873 GTPBP2Q9BX10 602 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms