RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PAGE2Q7Z2X7 111 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 C8orf59Q8N0T1 100 aaPredicted RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 SCAMP5Q8TAC9 235 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CNIH3Q8TBE1 160 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CCDC97Q96F63 343 aaPredicted RBP11.3□□□□□ -0.6
LDLR-208ENST00000558518 NPY6RQ99463 290 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 BDH2Q9BUT1 245 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 FUNDC2Q9BWH2 189 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 DUSP16Q9BY84 665 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 AMBNQ9NP70 447 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 IGSF5Q9NSI5 407 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 NSMCE4AQ9NXX6 385 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 CD300AQ9UGN4 299 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 UTS2RQ9UKP6 389 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 TCAF1Q9Y4C2 921 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 LAMA3Q16787 3333 aa11.3□□□□□ -0.6
LDLR-208ENST00000558518 GAS2O43903 313 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 TCF3P15923 654 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TCEA1P23193 301 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 ARNTP27540 789 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 HADHAP40939 763 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 MAGEA12P43365 314 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 GJA8P48165 433 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 CHRNB3Q05901 458 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 GALNT3Q14435 633 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 ZDHHC13Q8IUH4 622 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 CLYBLQ8N0X4 340 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 PELI3Q8N2H9 469 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 ZNF555Q8NEP9 628 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 OR7A2PQ8NGA2 310 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 PTERQ96BW5 349 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 IL12RB2Q99665 862 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 SLC30A3Q99726 388 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 SEZ6LQ9BYH1 1024 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TOR3AQ9H497 397 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 GLOD4Q9HC38 313 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 AGPAT4Q9NRZ5 378 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 DDX28Q9NUL7 540 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 TRHDEQ9UKU6 1024 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 VPS4AQ9UN37 437 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 MCM3APO60318 1980 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 MEIS3P2A8K0S8 358 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 SNAP91O60641 907 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 DAB1O75553 588 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 ANXA9O76027 345 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 RHOBTB1O94844 696 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 CDK14O94921 469 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TGFB3P10600 412 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 NR4A2P43354 598 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 OAZ1P54368 228 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 DSC2Q02487 901 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 PAFAH1B3Q15102 231 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 IQSEC1Q6DN90 963 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 SYTL1Q8IYJ3 562 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TRPM4Q8TD43 1214 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 DNAJB3Q8WWF6 145 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 IRGQQ8WZA9 623 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 FAR2Q96K12 515 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 EXOC2Q96KP1 924 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 HSFY1Q96LI6 401 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 SLC39A8Q9C0K1 460 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 RIBC2Q9H4K1 309 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 PGAP2Q9UHJ9 254 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 CNOT11Q9UKZ1 510 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 WDR37Q9Y2I8 494 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TPD52L2O43399 206 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 DIRAS1O95057 198 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 FADS2O95864 444 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 CST1P01037 141 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 HPCAL1P37235 193 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 CCT8P50990 548 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 VGLL4Q14135 290 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 GRIK4Q16099 956 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 NOL9Q5SY16 702 aaKnown RBP11.29□□□□□ -0.6
LDLR-208ENST00000558518 TAF2Q6P1X5 1199 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TAC4Q86UU9 113 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 SLC22A16Q86VW1 577 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 FAM126BQ8IXS8 530 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 MICU2Q8IYU8 434 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 TTC39CQ8N584 583 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 LPPQ93052 612 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 FAM162AQ96A26 154 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 GSTO2Q9H4Y5 243 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 ZFP14Q9HCL3 533 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 MTRRQ9UBK8 725 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 PSME2Q9UL46 239 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 PCDHB3Q9Y5E6 796 aa11.29□□□□□ -0.6
LDLR-208ENST00000558518 WDR81Q562E7 1941 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 MGAMO43451 1857 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 UBR3Q6ZT12 1888 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 A0A087X1B8 175 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 CLDN25C9JDP6 229 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 FFAR3O14843 346 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 GPR42O15529 346 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 CLASP2O75122 1294 aaKnown RBP11.28□□□□□ -0.6
LDLR-208ENST00000558518 TOMM70O94826 608 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 GSNP06396 782 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 THRBP10828 461 aa11.28□□□□□ -0.6
LDLR-208ENST00000558518 SERPINB1P30740 379 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms