RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 PRRC2BQ5JSZ5 2229 aaKnown RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 A0A0J9YYE9 177 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 HEPACAM2A8MVW5 462 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CHUKO15111 745 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 IPO13O94829 963 aaKnown RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 CBX6O95503 412 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 TRBC1P01850 177 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 ZNF37AP17032 561 aaPredicted RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 TFEBP19484 476 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 WEE1P30291 646 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 PTGER3P43115 390 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 RPL14P50914 215 aaKnown RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 ECT2LQ008S8 904 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 ZNF549Q6P9A3 640 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 AFAP1L2Q8N4X5 818 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 BPIFB1Q8TDL5 484 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 RIPOR3Q96MK2 946 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 TNKS2Q9H2K2 1166 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 EML4Q9HC35 981 aaKnown RBP16.78■□□□□ 0.28
LDLR-206ENST00000557958 GDE1Q9NZC3 331 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 MARK1Q9P0L2 795 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 APPL1Q9UKG1 709 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 CDH7Q9ULB5 785 aa16.78■□□□□ 0.28
LDLR-206ENST00000557958 C2orf16Q68DN1 1984 aa16.77■□□□□ 0.28
LDLR-206ENST00000557958 C1orf232A0A0U1RR37 186 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 CCDC189A1A4V9 331 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 CAPN8A6NHC0 703 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 H3BQ06 376 aaPredicted RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 SMIM24O75264 130 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 VPS26AO75436 327 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 PIGNO95427 931 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 PAPLNO95428 1278 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 CD9P21926 228 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 PTPN4P29074 926 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 LTBRP36941 435 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 ADARP55265 1226 aaKnown RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 SKIV2LQ15477 1246 aaKnown RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 MYLK3Q32MK0 819 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 ACCSLQ4AC99 568 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 DGKKQ5KSL6 1271 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 TANGO2Q6ICL3 276 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 LYSMD3Q7Z3D4 306 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 AHI1Q8N157 1196 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 CCNYL1Q8N7R7 359 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 ZNF781Q8N8C0 355 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 RPL10LQ96L21 214 aaKnown RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 MYADMQ96S97 322 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 TACO1Q9BSH4 297 aaKnown RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 CPEB1Q9BZB8 566 aaKnown RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 ZFP14Q9HCL3 533 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 BPIFA1Q9NP55 256 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 HECAQ9UBI9 543 aaPredicted RBP16.77■□□□□ 0.27
LDLR-206ENST00000557958 SLC8A2Q9UPR5 921 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 C5orf42Q9H799 3197 aa16.77■□□□□ 0.27
LDLR-206ENST00000557958 DIAPH2O60879 1101 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 POP4O95707 220 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 ESR1P03372 595 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ESRRAP11474 423 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 CTPS1P17812 591 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 FMO4P31512 558 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ARRB2P32121 409 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 NNMTP40261 264 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 RECQLP46063 649 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 ARL13AQ5H913 290 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 SEL1L3Q68CR1 1132 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 UGT3A1Q6NUS8 523 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 CYB5D1Q6P9G0 228 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 TRIM67Q6ZTA4 783 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 USP45Q70EL2 814 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 TAS2R42Q7RTR8 314 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 PIM3Q86V86 326 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 NKAPQ8N5F7 415 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 TXNDC5Q8NBS9 432 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 RHEBL1Q8TAI7 183 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 MAGEC3Q8TD91 643 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ANKRD49Q8WVL7 239 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 STON2Q8WXE9 905 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ZNF641Q96N77 438 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 TRMOQ9BU70 441 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 EBF3Q9H4W6 596 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 HDAC3O15379 428 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ZNF821O75541 412 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 TPBGLP0DKB5 382 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 T-ENOLP0DO92 83 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 PKMP14618 531 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 POLR2EP19388 210 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 ITGALP20701 1170 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 STK19P49842 368 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 IDH3AP50213 366 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ALDH18A1P54886 795 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 ATP6V0D1P61421 351 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 PEX6Q13608 980 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 GRM2Q14416 872 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 PTPRNQ16849 979 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 HSF5Q4G112 596 aaPredicted RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 CARD16Q5EG05 197 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 LYPLAL1Q5VWZ2 237 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 METTL21CQ5VZV1 264 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 RAB44Q7Z6P3 723 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms