RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ELK3P41970 407 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 GPR1P46091 355 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CDKN1CP49918 316 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 ARL4CP56559 192 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 PDE1BQ01064 536 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 BNC1Q01954 994 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CAV1Q03135 178 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 PDIA2Q13087 525 aaKnown RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CBLBQ13191 982 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SMAD1Q15797 465 aaKnown RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SKIDA1Q1XH10 827 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 ANKRD20A4Q4UJ75 823 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 ATP13A5Q4VNC0 1218 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 DNAJC21Q5F1R6 531 aaKnown RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 ZNF648Q5T619 568 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 KCTD16Q68DU8 428 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 LAIR1Q6GTX8 287 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 RAET1GQ6H3X3 334 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CASC4Q6P4E1 433 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SDK1Q7Z5N4 2213 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 TMEM135Q86UB9 458 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 TRIM74Q86UV6 250 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 NLRP8Q86W28 1048 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 ANKMY2Q8IV38 441 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SLC22A18ASQ8N1D0 253 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 HDAC10Q969S8 669 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 STAMBPL1Q96FJ0 436 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 LOXL4Q96JB6 756 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 PLEKHG4BQ96PX9 1271 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 EBNA1BP2Q99848 306 aaKnown RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 APOOQ9BUR5 198 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SPATA16Q9BXB7 569 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 FRMD8Q9BZ67 464 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 SEMA4AQ9H3S1 761 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 MRM3Q9HC36 420 aaKnown RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 NFKBIL1Q9UBC1 381 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-227ENST00000557269 RAB23Q9ULC3 237 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 RIMKLBQ9ULI2 386 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 CHMP2BQ9UQN3 213 aa12.75□□□□□ -0.37
SHMT2-227ENST00000557269 A0A1B0GTW7 788 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 ZCWPW2A0A1B0GU75 182 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 FAM237BA0A1B0GVD1 139 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 A0A1B0GVT2 93 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 NDC80O14777 642 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 INPP4BO15327 924 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 SRP72O76094 671 aaKnown RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 MC4RP32245 332 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 MPLP40238 635 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 NAA30Q147X3 362 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 ADAMTSL4Q6UY14 1074 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 KYAT3Q6YP21 454 aaKnown RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 NLRP9Q7RTR0 991 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 HEATR4Q86WZ0 1026 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 SPATS2Q86XZ4 545 aaKnown RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 IFT20Q8IY31 132 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 GSPT2Q8IYD1 628 aaKnown RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 UNC5BQ8IZJ1 945 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 TRAM1L1Q8N609 369 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 MFSD2AQ8NA29 543 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 PTCD2Q8WV60 388 aaKnown RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 CCDC97Q96F63 343 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 C19orf43Q9BQ61 176 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 TEX101Q9BY14 249 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 CDH19Q9H159 772 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 ARFGAP3Q9NP61 516 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 SAYSD1Q9NPB0 183 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 GPR27Q9NS67 375 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 RAD18Q9NS91 495 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 IL1RAPL1Q9NZN1 696 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 PNMA8BQ9ULN7 279 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 NFU1Q9UMS0 254 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 SPAG17Q6Q759 2223 aa12.74□□□□□ -0.37
SHMT2-227ENST00000557269 ZNF106Q9H2Y7 1883 aaKnown RBP12.74□□□□□ -0.37
SHMT2-227ENST00000557269 MUC6Q6W4X9 2439 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 GON4LQ3T8J9 2241 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 MAGEB16A2A368 324 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 A6NNZ2 444 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 GOLGA8KD6RF30 607 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 GOLGA8TH3BQL2 631 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 H7C0S8 307 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 TLR4O00206 839 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 VILLO15195 856 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 VAPBO95292 243 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PRAMEF1O95521 474 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 GOT2P00505 430 aaKnown RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 THEGLP0DJG4 465 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 MYBL2P10244 700 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 TSHRP16473 764 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PGAM1P18669 254 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 HADHAP40939 763 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ARCN1P48444 511 aaKnown RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 POLD2P49005 469 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 AFF3P51826 1226 aaKnown RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 CDK3Q00526 305 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 NHLH1Q02575 133 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 LAMB3Q13751 1172 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 PDE1CQ14123 709 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 HLTFQ14527 1009 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-227ENST00000557269 SEMA3AQ14563 771 aa12.73□□□□□ -0.37
SHMT2-227ENST00000557269 ERCC6LQ2NKX8 1250 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms