RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 PISDQ9UG56 409 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 SEPT3Q9UH03 358 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 LOXL2Q9Y4K0 774 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PCDHGC4Q9Y5F7 938 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PCDHGA7Q9Y5G6 932 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 NPIPB15A6NHN6 443 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 PYCARD-AS1I3L0S3 204 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 DAPK3O43293 454 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 MAFKO60675 156 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 RNF8O76064 485 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 HEXIM1O94992 359 aaKnown RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 CEACAM5P06731 702 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 DESP17661 470 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 WT1P19544 449 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 VIPR1P32241 457 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 RWDD2BP57060 319 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 B4GALNT1Q00973 533 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 EIF3IQ13347 325 aaKnown RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 IHHQ14623 411 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 C16orf72Q14CZ0 275 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 ACOX1Q15067 660 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 DPYSL2Q16555 572 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 SEL1L2Q5TEA6 688 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 CCDC70Q6NSX1 233 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 CCDC81Q6ZN84 652 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 RFLNAQ6ZTI6 216 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF438Q7Z4V0 828 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 POLNQ7Z5Q5 900 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 TSPAN33Q86UF1 283 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 HEATR4Q86WZ0 1026 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 C17orf82Q86X59 251 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 JAMLQ86YT9 394 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 EXD3Q8N9H8 876 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 SPATA4Q8NEY3 305 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 OR6C4Q8NGE1 309 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 GPBAR1Q8TDU6 330 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 MAIP1Q8WWC4 291 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 NUS1Q96E22 293 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 DTD2Q96FN9 168 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 CAPZA3Q96KX2 299 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 TMEM74Q96NL1 305 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 CSPG4P5Q96PW8 444 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 SMIM14Q96QK8 99 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 MGME1Q9BQP7 344 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 STRADBQ9C0K7 418 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 SEMA6CQ9H3T2 930 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 GOLPH3Q9H4A6 298 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 SUDS3Q9H7L9 328 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 NOD2Q9HC29 1040 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 SPATS2LQ9NUQ6 558 aaKnown RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 FOXJ2Q9P0K8 574 aa10.56□□□□□ -0.72
SHMT2-215ENST00000554656 PACSIN2Q9UNF0 486 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-215ENST00000554656 PRAMEF33A0A0G2JMD5 474 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 C9orf172C9J069 976 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 H3BRJ5 948 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 J3QKU1 62 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 PDE2AO00408 941 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF185O15231 689 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 B4GAT1O43505 415 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 CEP104O60308 925 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 PRAMEF10O60809 474 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 SOCS5O75159 536 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 SOD1P00441 154 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 CPP00450 1065 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 MYCLP1P12525 358 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 CCNB1P14635 433 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 PNLIPP16233 465 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 AK4P27144 223 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 PCK1P35558 622 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 ETV3P41162 512 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 CETN2P41208 172 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 MAXP61244 160 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF235Q14590 738 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 LINC00303Q3SY05 128 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 GLE1Q53GS7 698 aaKnown RBP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 VASH2Q86V25 355 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 ZFAND4Q86XD8 727 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 KATNAL2Q8IYT4 538 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 PATE1Q8WXA2 126 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 BTBD6Q96KE9 485 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF599Q96NL3 588 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 NUDCD1Q96RS6 583 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 TEX101Q9BY14 249 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 DPEP2Q9H4A9 486 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 CARS2Q9HA77 564 aaKnown RBP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 RDH14Q9HBH5 336 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 DDX56Q9NY93 547 aaKnown RBP10.55□□□□□ -0.72
SHMT2-215ENST00000554656 LRIT1Q9P2V4 623 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 MOSPD1Q9UJG1 213 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 SPTA1P02549 2419 aa10.55□□□□□ -0.72
SHMT2-215ENST00000554656 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 B8ZZF3 427 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 TMX2-CTNND1H3BSU7 103 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 NVLO15381 856 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 NUDT21O43809 227 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 FGF1P05230 155 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 KRT7P08729 469 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 JMJD7P0C870 316 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms