RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 TMEM18Q96B42 140 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 ZNF501Q96CX3 271 aaPredicted RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 SIPA1Q96FS4 1042 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 MSTO1Q9BUK6 570 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 IFT27Q9BW83 186 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 RBM4Q9BWF3 364 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 TRIM31Q9BZY9 425 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 XPO4Q9C0E2 1151 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 KLHL4Q9C0H6 718 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 INTS2Q9H0H0 1204 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 KAT14Q9H8E8 782 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 XAB2Q9HCS7 855 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 PDE7BQ9NP56 450 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 SLC22A11Q9NSA0 550 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 TMLHEQ9NVH6 421 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 COQ3Q9NZJ6 369 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 MRPL15Q9P015 296 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 CPSF2Q9P2I0 782 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 LIMA1Q9UHB6 759 aaKnown RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 TMCC3Q9ULS5 477 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 TCF19Q9Y242 345 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 LYVE1Q9Y5Y7 322 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 KCNE2Q9Y6J6 123 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 ZFP37Q9Y6Q3 630 aaPredicted RBP2.35□□□□□ -2.03
SRP54-204ENST00000553923 FAM169AQ9Y6X4 670 aa2.35□□□□□ -2.03
SRP54-204ENST00000553923 NOTCH2Q04721 2471 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 IGKV3D-15A0A087WSY6 115 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 TEX13CA0A0J9YWL9 993 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 C17orf102A2RUQ5 167 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 AGAP14A8MT82 685 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 MYO1GB0I1T2 1018 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 H0Y626 953 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 SNAP23O00161 211 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 MPHOSPH10O00566 681 aaKnown RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 SH2B2O14492 632 aaPredicted RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 PSMA7O14818 248 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 RNMTO43148 476 aaKnown RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 HNRNPRO43390 633 aaKnown RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 SLC22A3O75751 556 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 IGHV4-30-4P0DP06 118 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 FCGR2AP12318 317 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 RARGP13631 454 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 IL11P20809 199 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 ATP5DP30049 168 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 FMO4P31512 558 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 HPDP32754 393 aaPredicted RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 RFC1P35251 1148 aaPredicted RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 HNF4AP41235 474 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 CAPZA2P47755 286 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 CLCNKBP51801 687 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 NR0B1P51843 470 aaKnown RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 PPP5CP53041 499 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 BRWD1-AS2P59051 145 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 CDK18Q07002 472 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 GOLGA8DPQ0D2H9 430 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 EPS8Q12929 822 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 MMEL1Q495T6 779 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 DUSP28Q4G0W2 176 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 GXYLT1Q4G148 440 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 RUNDC3AQ59EK9 446 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 MTFR2Q6P444 385 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 TMEM154Q6P9G4 183 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 CYP20A1Q6UW02 462 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 IL27RAQ6UWB1 636 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 SH2D6Q7Z4S9 175 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 PATL1Q86TB9 770 aaKnown RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 PRPF39Q86UA1 669 aaKnown RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 LMNTD2Q8IXW0 634 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 SCML4Q8N228 414 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 MAB21L3Q8N8X9 362 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 ZNF441Q8N8Z8 693 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 KBTBD3Q8NAB2 608 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 SPC24Q8NBT2 197 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 APPL2Q8NEU8 664 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 OR6J1Q8NGC5 347 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 TAS1R2Q8TE23 839 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 FAR1Q8WVX9 515 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 ZNF653Q96CK0 615 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 KTI12Q96EK9 354 aaPredicted RBP2.34□□□□□ -2.03
SRP54-204ENST00000553923 SAAL1Q96ER3 474 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 FRG2BQ96QU4 278 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 PIGSQ96S52 555 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 PIP5K1AQ99755 562 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 NCAPGQ9BPX3 1015 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 FUZQ9BT04 418 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 CLPBQ9H078 707 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.34□□□□□ -2.03
SRP54-204ENST00000553923 NDST4Q9H3R1 872 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 SH2D4AQ9H788 454 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 HCFC1R1Q9NWW0 138 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 GTF3C4Q9UKN8 822 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 SARDHQ9UL12 918 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 OSGIN2Q9Y236 505 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 GDAQ9Y2T3 454 aa2.34□□□□□ -2.03
SRP54-204ENST00000553923 GREB1LQ9C091 1923 aaPredicted RBP2.33□□□□□ -2.04
SRP54-204ENST00000553923 FAM237BA0A1B0GVD1 139 aa2.33□□□□□ -2.04
SRP54-204ENST00000553923 NPIPB15A6NHN6 443 aaPredicted RBP2.33□□□□□ -2.04
SRP54-204ENST00000553923 FAM90A20PA6NIJ5 464 aa2.33□□□□□ -2.04
SRP54-204ENST00000553923 NPIPB13A6NJU9 1138 aa2.33□□□□□ -2.04
SRP54-204ENST00000553923 SH2D7A6NKC9 451 aaPredicted RBP2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms