RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SUSD3Q96L08 255 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ATOH8Q96SQ7 321 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SLC30A3Q99726 388 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 UPF3AQ9H1J1 476 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TMEM248Q9NWD8 314 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 NOD1Q9Y239 953 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TLR6Q9Y2C9 796 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 MYRFQ9Y2G1 1151 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 FNDC3AQ9Y2H6 1198 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ASB1Q9Y576 335 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PIKFYVEQ9Y2I7 2098 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 A0A0D9SEW6 157 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 A0A0U1RQF3 1178 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 DHRS12A0PJE2 317 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ASPDHA6ND91 283 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SUPT3HB4E1H0 165 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 CDC7O00311 574 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ANGPT2O15123 496 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 GPR182O15218 404 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 FOXD2O60548 495 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 KPNA6O60684 536 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SUPT3HO75486 399 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 BAIAP3O94812 1187 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TMCC1O94876 653 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 CTGFP29279 349 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 FMO4P31512 558 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 HTR7P34969 479 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 CASP2P42575 452 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ALDH3B2P48448 385 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 HPCAP84074 193 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 POLD3Q15054 466 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TSNQ15631 228 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PAGE3Q5JUK9 113 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 KANK2Q63ZY3 851 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PPP4R4Q6NUP7 873 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 UGT3A1Q6NUS8 523 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 MSANTD2Q6P1R3 559 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 HACD2Q6Y1H2 254 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 CMTR2Q8IYT2 770 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 OFCC1Q8IZS5 231 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 MIER2Q8N344 545 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TEX26Q8N6G2 289 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ANKFN1Q8N957 763 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PCYOX1LQ8NBM8 494 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ATAD1Q8NBU5 361 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TFAP2CQ92754 450 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 LRRC58Q96CX6 371 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 FBXL20Q96IG2 436 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 C1orf74Q96LT6 269 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TMEM74Q96NL1 305 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 RPRD1AQ96P16 312 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PPP1R2P1Q96PQ5 205 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TCF12Q99081 682 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ZBED2Q9BTP6 218 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TRMOQ9BU70 441 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 C1orf50Q9BV19 199 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 TRIM62Q9BVG3 475 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ANKRD60Q9BZ19 345 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SLC52A3Q9NQ40 469 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 MRPL40Q9NQ50 206 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PNPLA3Q9NST1 481 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 CCM2LQ9NUG4 571 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ABCD2Q9UBJ2 740 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 RSL24D1Q9UHA3 163 aaKnown RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 OAZ3Q9UMX2 235 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PHF24Q9UPV7 400 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 MED16Q9Y2X0 877 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 PRG3Q9Y2Y8 225 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-213ENST00000552720 NDUFAF1Q9Y375 327 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 SPO11Q9Y5K1 396 aa7.47□□□□□ -1.21
LIMA1-213ENST00000552720 ARPC2O15144 300 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF623O75123 536 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 BMP2P12643 396 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 OR1E1P30953 314 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 RGRP47804 291 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ARPP19P56211 112 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 NFKB2Q00653 900 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 NRG1Q02297 640 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-213ENST00000552720 CLCQ05315 142 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 LPIN1Q14693 890 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 MAPRE1Q15691 268 aaKnown RBP7.46□□□□□ -1.21
LIMA1-213ENST00000552720 AAK1Q2M2I8 961 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 PYCR3Q53H96 274 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 BORAQ6PGQ7 559 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 LPCAT2Q7L5N7 544 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 MON1AQ86VX9 555 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 IFNL1Q8IU54 200 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ADGRG5Q8IZF4 528 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF786Q8N393 782 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 TTC16Q8NEE8 873 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 OR4L1Q8NH43 312 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 FAM81AQ8TBF8 368 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 GAB3Q8WWW8 586 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 TADA1Q96BN2 335 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ROPN1LQ96C74 230 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 HBEGFQ99075 208 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ACOX2Q99424 681 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 MTG1Q9BT17 334 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-213ENST00000552720 EFHD1Q9BUP0 239 aa7.46□□□□□ -1.21
LIMA1-213ENST00000552720 ARMC1Q9NVT9 282 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms