RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF420Q8TAQ5 688 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 DNAJB14Q8TBM8 379 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 NUDT8Q8WV74 236 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TWIST2Q8WVJ9 160 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 RNF34Q969K3 372 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ACDQ96AP0 544 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM125Q96AQ2 219 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 LRRC58Q96CX6 371 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 L3HYPDHQ96EM0 354 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CENPNQ96H22 339 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM74Q96NL1 305 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PPP1R10Q96QC0 940 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SLC30A3Q99726 388 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 HOPXQ9BPY8 73 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 RTP3Q9BQQ7 232 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TRMOQ9BU70 441 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TMUB1Q9BVT8 246 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SEZ6LQ9BYH1 1024 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 MROH8Q9H579 483 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 NOL6Q9H6R4 1146 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 MID1IP1Q9NPA3 183 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 LTB4R2Q9NPC1 389 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ENTPD7Q9NQZ7 604 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 MIOSQ9NXC5 875 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ACTR3BQ9P1U1 418 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 VWA7Q9Y334 891 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SH3GLB1Q9Y371 365 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 MAGED1Q9Y5V3 778 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 OAS3Q9Y6K5 1087 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 V9GYQ6 96 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 COL4A4P53420 1690 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 BBIP1A8MTZ0 92 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 UBXN8O00124 270 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 GIPC1O14908 333 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 XPOTO43592 962 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PAGE1O75459 146 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ZBTB11O95625 1053 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 IGLV3-25P01717 112 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SLC4A1P02730 911 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 LINC00032P0C843 101 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PRSS56P0CW18 603 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SMIM10L2AP0DMW4 78 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SMIM10L2BP0DMW5 78 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 HOXD8P13378 290 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CD1DP15813 335 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 IL10P22301 178 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PSMA4P25789 261 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ELK4P28324 431 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PRDX3P30048 256 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 HMOX2P30519 316 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SHMT2P34897 504 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 RFC2P35250 354 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 GSK3BP49841 420 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CLCN5P51795 746 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 BMXP51813 675 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 GEMP55040 296 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 STX1BP61266 288 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 HERVK_113P63132 956 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CYP51A1Q16850 503 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PLA2G4EQ3MJ16 856 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 MANEALQ5VSG8 457 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SPRYD7Q5W111 196 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 FAM117BQ6P1L5 589 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 DCDC5Q6ZRR9 648 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 KIAA0408Q6ZU52 694 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 USP51Q70EK9 711 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SLC22A9Q8IVM8 553 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ZC3H7AQ8IWR0 971 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 COLGALT2Q8IYK4 626 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CLYBLQ8N0X4 340 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 RYBPQ8N488 228 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PTGR2Q8N8N7 351 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 MAGEE2Q8TD90 523 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SEPT8Q92599 483 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 DCPSQ96C86 337 aaKnown RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 THAP11Q96EK4 314 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PLEKHA8Q96JA3 519 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 FEM1CQ96JP0 617 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 KLHL5Q96PQ7 755 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CSF3RQ99062 836 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 C9orf16Q9BUW7 83 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 ERVK-6Q9BXR3 956 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TRIM15Q9C019 465 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 PIF1Q9H611 641 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 CD320Q9NPF0 282 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 SDR39U1Q9NRG7 319 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 TMLHEQ9NVH6 421 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 POLG2Q9UHN1 485 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 EVLQ9UI08 416 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-212ENST00000552491 IKZF3Q9UKT9 509 aa5.41□□□□□ -1.54
LIMA1-212ENST00000552491 K7EPI3 171 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CXCL11O14625 94 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ANGPT2O15123 496 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 AXIN1O15169 862 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 TREHO43280 583 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CBFA2T3O75081 653 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CLASP2O75122 1294 aaKnown RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 MMP2P08253 660 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 HGFP14210 728 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 TCF3P15923 654 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms