RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 RAD23BP54727 409 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ZBED6P86452 979 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 STK4Q13043 487 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 MYBPC2Q14324 1141 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 GPR18Q14330 331 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 NEDD9Q14511 834 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 NAB2Q15742 525 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ETFDHQ16134 617 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ASTE1Q2TB18 679 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 PRTGQ2VWP7 1150 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ZSCAN23Q3MJ62 389 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ODF3L2Q3SX64 289 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 CDONQ4KMG0 1287 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 KIAA0930Q6ICG6 404 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 C11orf87Q6NUJ2 197 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 SEPT14Q6ZU15 432 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 CCDC13Q8IYE1 715 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 TEX11Q8IYF3 940 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 TAGAPQ8N103 731 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 OR8H2Q8N162 312 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 C17orf53Q8N3J3 647 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 LSMEM1Q8N8F7 131 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 NRACQ8N912 160 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ARRDC2Q8TBH0 407 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 TRIB2Q92519 343 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 IGSF8Q969P0 613 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ERGIC1Q969X5 290 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 CCDC34Q96HJ3 373 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 KRTAP4-5Q9BYR2 181 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 IFIH1Q9BYX4 1025 aaKnown RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 FOXP1Q9H334 677 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ESRP2Q9H6T0 727 aaKnown RBP4.98□□□□□ -1.61
LIMA1-205ENST00000550592 PLAC1Q9HBJ0 212 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 ERVK-7P63135 1459 aa4.98□□□□□ -1.61
LIMA1-205ENST00000550592 PREX2Q70Z35 1606 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 PLEKHH2Q8IVE3 1493 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 DNAJC9-AS1A6NH13 148 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 BECN2A8MW95 431 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 KDM4EB2RXH2 506 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-205ENST00000550592 B4DLN1 442 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 AKR1B15C9JRZ8 316 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-205ENST00000550592 SOCS2O14508 198 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 DAB1O75553 588 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 JRKO75564 520 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 BEST1O76090 585 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 STARD3NLO95772 234 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 SYF2O95926 243 aaKnown RBP4.97□□□□□ -1.61
LIMA1-205ENST00000550592 FTCDO95954 541 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 AKR1B1P15121 316 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 NAGAP17050 411 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 GCH1P30793 250 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 PIK3CAP42336 1068 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 ENTPD1P49961 510 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 METAP2P50579 478 aaKnown RBP eCLIP4.97□□□□□ -1.61
LIMA1-205ENST00000550592 PMS2P54278 862 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 GALCP54803 685 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 TFAP4Q01664 338 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 PCGF3Q3KNV8 242 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 Q6ZTK2 550 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 HACE1Q8IYU2 909 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 OR14L1PQ8NHC6 308 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 RRNAD1Q96FB5 475 aaKnown RBP4.97□□□□□ -1.61
LIMA1-205ENST00000550592 HARBI1Q96MB7 349 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 MXD3Q9BW11 206 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 KCNN2Q9H2S1 579 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 LTB4R2Q9NPC1 389 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 GPR108Q9NPR9 543 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 HINT3Q9NQE9 182 aaKnown RBP4.97□□□□□ -1.61
LIMA1-205ENST00000550592 SETD4Q9NVD3 440 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 OR6C3Q9NZP0 311 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 OGFRQ9NZT2 677 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 NENFQ9UMX5 172 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 SYCP2Q9BX26 1530 aa4.97□□□□□ -1.61
LIMA1-205ENST00000550592 INO80Q9ULG1 1556 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 CHD2O14647 1828 aaKnown RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 A0A1B0GVM2 712 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 RPS10-NUDT3A0A1W2PQS6 291 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 VWA5AO00534 786 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 SPRY3O43610 288 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 ITM2AO43736 263 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 HS6ST1O60243 411 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 EIF5BO60841 1220 aaKnown RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 VNN2O95498 520 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 NR2F1P10589 423 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 HOXB2P14652 356 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 DDX5P17844 614 aaKnown RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 MAOAP21397 527 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 PIGAP37287 484 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 RFX2P48378 723 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 CAMPP49913 170 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 SNX16P57768 344 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 IFI35P80217 286 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 IKQ13123 557 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 CTTNQ14247 550 aaKnown RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 BECN1Q14457 450 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 CCDC142Q17RM4 750 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 MMEL1Q495T6 779 aa4.96□□□□□ -1.62
LIMA1-205ENST00000550592 DNTTIP2Q5QJE6 756 aaKnown RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 OTUD1Q5VV17 481 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-205ENST00000550592 METTL2BQ6P1Q9 378 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms