RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 RHOQP17081 205 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 BPIP17213 487 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 TYRP1P17643 537 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 HTR1EP28566 365 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 CA5AP35218 305 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 RGRP47804 291 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 MAPKAPK2P49137 400 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 PMS1P54277 932 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 HDAC4P56524 1084 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 SLC25A52Q3SY17 297 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 PTPN20Q4JDL3 420 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 PYCR3Q53H96 274 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 INO80DQ53TQ3 878 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 MANEALQ5VSG8 457 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 HGSNATQ68CP4 663 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 DENND2CQ68D51 928 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 DPPA4Q7L190 304 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 CUZD1Q86UP6 607 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 PPP1R3BQ86XI6 285 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 GLIS1Q8NBF1 620 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 ZNF397Q8NF99 534 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 NUS1Q96E22 293 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 SCARF2Q96GP6 870 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 ZNF641Q96N77 438 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 SARS2Q9NP81 518 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 TMEM248Q9NWD8 314 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 TBC1D29Q9UFV1 150 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 OR12D3Q9UGF7 316 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 STAP1Q9ULZ2 295 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 G3BP2Q9UN86 482 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 PRKAB1Q9Y478 270 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 PCDHGA10Q9Y5H3 936 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 KLF2Q9Y5W3 355 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 ACANP16112 2415 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 FAM237AA0A1B0GTK4 181 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 A0A1B0GVL5 298 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 GOLGA6CA6NDK9 693 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 GOLGA6BA6NDN3 693 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 GOLGA6DP0CG33 693 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 EPHA4P54764 986 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 LLGL1Q15334 1064 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 KYNUQ16719 465 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 ACBD5Q5T8D3 534 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 TMCO4Q5TGY1 634 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 IYDQ6PHW0 289 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 TRIM74Q86UV6 250 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 DNAAF5Q86Y56 855 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 CBARPQ8N350 705 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 EHBP1Q8NDI1 1231 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 ITLN2Q8WWU7 325 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 GOLGA6AQ9NYA3 693 aa15.24■□□□□ 0.03
CLSTN3-216ENST00000545663 RASSF9O75901 435 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 MYL1P05976 194 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 PTMSP20962 102 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 FLT3P36888 993 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 ETV3P41162 512 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 SYKP43405 635 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 UBE2HP62256 183 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 PTPRRQ15256 657 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 LCN10Q6JVE6 187 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 NXPE1Q8N323 547 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 ARFGAP1Q8N6T3 406 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 CASKIN2Q8WXE0 1202 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 NSMCE3Q96MG7 304 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 CFAP57Q96MR6 1250 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 SYNCQ9H7C4 482 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 ZBTB20Q9HC78 741 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 GDPD2Q9HCC8 539 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 UBE2TQ9NPD8 197 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 PLCB1Q9NQ66 1216 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 AGPAT4Q9NRZ5 378 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 B4GALT6Q9UBX8 382 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 HOOK1Q9UJC3 728 aaKnown RBP15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 SLC30A1Q9Y6M5 507 aa15.23■□□□□ 0.03
CLSTN3-216ENST00000545663 BECN2A8MW95 431 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 PFKFB1P16118 471 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 KCNAB1Q14722 419 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 CNGA3Q16281 694 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 ZNF630Q2M218 657 aaPredicted RBP15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 BNIPLQ7Z465 357 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 HSD11B1LQ7Z5J1 315 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 ZBTB2Q8N680 514 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 CCDC47Q96A33 483 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 SH3KBP1Q96B97 665 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 C5AR2Q9P296 337 aa15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 AJAP1Q9UKB5 411 aaPredicted RBP15.22■□□□□ 0.03
CLSTN3-216ENST00000545663 A0A1B0GUH1 482 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 TRIM49BA6NDI0 452 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 PMM2O15305 246 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 SNX2O60749 519 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 LRIG2O94898 1065 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 STSP08842 583 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 FOLR1P15328 257 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 TNFAIP3P21580 790 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 USP8P40818 1118 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 FKBP3Q00688 224 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 ATP1A4Q13733 1029 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 SMTNL2Q2TAL5 461 aa15.21■□□□□ 0.03
CLSTN3-216ENST00000545663 VWA5B1Q5TIE3 1220 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms