RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 KCTD5Q9NXV2 234 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 GOLGA6AQ9NYA3 693 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 EGFL7Q9UHF1 273 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 CD84Q9UIB8 345 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 SLC17A4Q9Y2C5 497 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 TMEM98Q9Y2Y6 226 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PPIL1Q9Y3C6 166 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 LRP4O75096 1905 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ZNF462Q96JM2 2506 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 HELZ2Q9BYK8 2649 aaKnown RBP8.44□□□□□ -1.06
USP28-215ENST00000545608 UNC13CQ8NB66 2214 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 A0A087X0T9 212 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 RHPN2P1A8MT19 583 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 PYCARD-AS1I3L0S3 204 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 PPM1DO15297 605 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 MAP3K6O95382 1288 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CPNE6O95741 557 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 SOD1P00441 154 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 SERPINC1P01008 464 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CYP1A2P05177 515 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 IVLP07476 585 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 FAM228BP0C875 321 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 LIPCP11150 499 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CCL4P13236 92 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 WT1P19544 449 aaPredicted RBP8.43□□□□□ -1.06
USP28-215ENST00000545608 TEAD1P28347 426 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CD1CP29017 333 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 PBX1P40424 430 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 GPR1P46091 355 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 ARSEP51690 589 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CDH6P55285 790 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 PTSQ03393 145 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 DPTQ07507 201 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 ITKQ08881 620 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 KRT81Q14533 505 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 NR1D2Q14995 579 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 MAP9Q49MG5 647 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 TDRD12Q587J7 1177 aaKnown RBP8.43□□□□□ -1.06
USP28-215ENST00000545608 RALGPS1Q5JS13 557 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 NKAIN2Q5VXU1 208 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 LRRC66Q68CR7 880 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CAVIN1Q6NZI2 390 aaKnown RBP8.43□□□□□ -1.06
USP28-215ENST00000545608 DOK6Q6PKX4 331 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 USP45Q70EL2 814 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 TRIM74Q86UV6 250 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 VASH2Q86V25 355 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 PIM3Q86V86 326 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 DTX1Q86Y01 620 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 CPNE8Q86YQ8 564 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP28-215ENST00000545608 NIPA2Q8N8Q9 360 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 FAM71BQ8TC56 605 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 NSMCE1Q8WV22 266 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 SCAMP4Q969E2 229 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 TMEM159Q96B96 161 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 SCARF2Q96GP6 870 aaPredicted RBP8.43□□□□□ -1.06
USP28-215ENST00000545608 AGAP2Q99490 1192 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 NUDT22Q9BRQ3 303 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 NUP85Q9BW27 656 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 IP6K2Q9UHH9 426 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 ANAPC7Q9UJX3 599 aa8.43□□□□□ -1.06
USP28-215ENST00000545608 COL6A6A6NMZ7 2263 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 TRBV23OR9-2A0A075B6M9 112 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 IGHV5-10-1A0A0J9YXX1 117 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 A0A0J9YYE9 177 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 MFSD11O43934 449 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 PRLP01236 227 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 TRBC1P01850 177 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 FGF3P11487 239 aaPredicted RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 NFKBIAP25963 317 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 SERPINB6P35237 376 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 GARSP41250 739 aaKnown RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 ACTR1BP42025 376 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 SSR1P43307 286 aaKnown RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 ARSDP51689 593 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 LIMK2P53671 638 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 ACTR1AP61163 376 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 FANCCQ00597 558 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 DSC2Q02487 901 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 GALNT2Q10471 571 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 DPYSL3Q14195 570 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 PAFAH1B3Q15102 231 aaKnown RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 NFKBIBQ15653 356 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 PYCR3Q53H96 274 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 MANEAQ5SRI9 462 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 CCDC122Q5T0U0 273 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 NCBP2-AS2Q69YL0 99 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 ADAMTSL4Q6UY14 1074 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 MARK2Q7KZI7 788 aaKnown RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 NLRP8Q86W28 1048 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 LRRC49Q8IUZ0 686 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 RCBTB1Q8NDN9 531 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 ARRDC2Q8TBH0 407 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 CPLX3Q8WVH0 158 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 JPH3Q8WXH2 748 aaPredicted RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 MAML1Q92585 1016 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 SYN2Q92777 582 aaPredicted RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 EXTL1Q92935 676 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 PMEPA1Q969W9 287 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 AP2M1Q96CW1 435 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms