RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 DCLRE1BQ9H816 532 aa8.88□□□□□ -0.99
VPS13D-212ENST00000543766 USP29Q9HBJ7 922 aa8.88□□□□□ -0.99
VPS13D-212ENST00000543766 RXFP1Q9HBX9 757 aa8.88□□□□□ -0.99
VPS13D-212ENST00000543766 CHORDC1Q9UHD1 332 aaPredicted RBP8.88□□□□□ -0.99
VPS13D-212ENST00000543766 HRH3Q9Y5N1 445 aa8.88□□□□□ -0.99
VPS13D-212ENST00000543766 CDY2AQ9Y6F7 541 aa8.88□□□□□ -0.99
VPS13D-212ENST00000543766 AFDNP55196 1824 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SOCS6O14544 535 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 VILLO15195 856 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 YBX3P16989 372 aaKnown RBP eCLIP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PCSK6P29122 969 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 STAT5AP42229 794 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ARCN1P48444 511 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ZP2Q05996 745 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TFDP1Q14186 410 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 MAPK11Q15759 364 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CERKLQ49MI3 558 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ZNF772Q68DY9 489 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SLC16A13Q7RTY0 426 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 FIBCD1Q8N539 461 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 OR2L5Q8NG80 312 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ZNF707Q96C28 371 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ZNF560Q96MR9 790 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ZDHHC15Q96MV8 337 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 LHX5Q9H2C1 402 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PABPC3Q9H361 631 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PRDM9Q9NQV7 894 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 AGPAT5Q9NUQ2 364 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SARDHQ9UL12 918 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 C19orf53Q9UNZ5 99 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CTNND2Q9UQB3 1225 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SAMHD1Q9Y3Z3 626 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 KCNE2Q9Y6J6 123 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ZNF804BA4D1E1 1349 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CENPXA8MT69 81 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 RPS17P08708 135 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TMIGD3P0DMS9 266 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 AKT1P31749 480 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CIITAP33076 1130 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 MAGEA1P43355 309 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 GPR3P46089 330 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 HTR3AP46098 478 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TPMTP51580 245 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TRAM2Q15035 370 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PDK1Q15118 436 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 RARS2Q5T160 578 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CYB5R4Q7L1T6 521 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 FITM2Q8N6M3 262 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CSPG4P5Q96PW8 444 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 KIFC1Q9BW19 673 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TLE6Q9H808 572 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 NYAP2Q9P242 653 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 POLIQ9UNA4 740 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PCDHA13Q9Y5I0 950 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TJP1Q07157 1748 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 RBAK-RBAKDNI3L0D1 243 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SLC16A6O15403 523 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ARHGEF9O43307 516 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ERAL1O75616 437 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CCNB2O95067 398 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PLATP00750 562 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PSAPP07602 524 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 MMP2P08253 660 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 NUDT17P0C025 328 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ADRA1DP25100 572 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 RPL5P46777 297 aaKnown RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ID4P47928 161 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 IRF4Q15306 451 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CA9Q16790 459 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SCIMPQ6UWF3 145 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 CHST3Q7LGC8 479 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SMYD4Q8IYR2 804 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 ULK2Q8IYT8 1036 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PRR18Q8N4B5 295 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 KBTBD3Q8NAB2 608 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PCYOX1LQ8NBM8 494 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 RACGAP1Q9H0H5 632 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 MKNK2Q9HBH9 465 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 GLOD4Q9HC38 313 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 EXTL2Q9UBQ6 330 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 KCNJ14Q9UNX9 436 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 STXBP5LQ9Y2K9 1186 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PRELID3BQ9Y3B1 194 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 USP15Q9Y4E8 981 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-212ENST00000543766 SLC12A7Q9Y666 1083 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 PNPLA7Q6ZV29 1317 aa8.87□□□□□ -0.99
VPS13D-212ENST00000543766 TIAM2Q8IVF5 1701 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 BCORQ6W2J9 1755 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 ATRNO75882 1429 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 A0A0B4J269 797 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 KLRG2A4D1S0 409 aaPredicted RBP8.86□□□□□ -0.99
VPS13D-212ENST00000543766 C2orf71A6NGG8 1288 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 EVPLLA8MZ36 301 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 HTRA2O43464 458 aaPredicted RBP8.86□□□□□ -0.99
VPS13D-212ENST00000543766 TLR5O60602 858 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 UNC5CO95185 931 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 AMPD1P23109 780 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 CXCR5P32302 372 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 NUDT1P36639 197 aa8.86□□□□□ -0.99
VPS13D-212ENST00000543766 GP5P40197 560 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms