RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 GPR158Q5T848 1215 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 HECTD2Q5U5R9 776 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 FAM117BQ6P1L5 589 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 C8orf82Q6P1X6 216 aaPredicted RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 LARP4Q71RC2 724 aaKnown RBP eCLIP12.49□□□□□ -0.41
RNF4-222ENST00000541204 LPCAT2Q7L5N7 544 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 RETREG3Q86VR2 466 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 ALDH16A1Q8IZ83 802 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 FAM47BQ8NA70 645 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 HDAC10Q969S8 669 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 HHIPL1Q96JK4 782 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 UHRF1Q96T88 793 aaPredicted RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 TSEN34Q9BSV6 310 aaKnown RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 TTPALQ9BTX7 342 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 EFHD1Q9BUP0 239 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 PNPLA3Q9NST1 481 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 MRGBPQ9NV56 204 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 GIMAP2Q9UG22 337 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 CRYL1Q9Y2S2 319 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 PTGDR2Q9Y5Y4 395 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 SAC3D1A6NKF1 404 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 SLC38A8A6NNN8 435 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 WASH4PA8MWX3 477 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 C9JVG2 144 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 SLC6A4P31645 630 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 LEPRP48357 1165 aaKnown RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 ALDH3B2P48448 385 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 CDKN2DP55273 166 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 CDH13P55290 713 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 RPS24P62847 133 aaKnown RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 HTRA3P83110 453 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 NRG1Q02297 640 aaPredicted RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 KIF19Q2TAC6 998 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 MAP7D1Q3KQU3 841 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 NHSL2Q5HYW2 709 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 KIAA0408Q6ZU52 694 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 PIM3Q86V86 326 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 DENND1CQ8IV53 801 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 FAM126BQ8IXS8 530 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 OR7D4Q8NG98 312 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 OR52K2Q8NGK3 314 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 OR13J1Q8NGT2 312 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 RIN3Q8TB24 985 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 SEPT8Q92599 483 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 EXT2Q93063 718 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 DUS3LQ96G46 650 aaKnown RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 UBXN10Q96LJ8 280 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 PRKD2Q9BZL6 878 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.48□□□□□ -0.41
RNF4-222ENST00000541204 GKN1Q9NS71 199 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 AURKCQ9UQB9 309 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 ARL5AQ9Y689 179 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 COL4A4P53420 1690 aaPredicted RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 UGT1A6P19224 532 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 IMPDH1P20839 514 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 TACR2P21452 398 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 CLCN5P51795 746 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 PLOD1Q02809 727 aaPredicted RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 BFSP2Q13515 415 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 SERINC3Q13530 473 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 ZNF235Q14590 738 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 ZNF678Q5SXM1 525 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 SLC22A9Q8IVM8 553 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 FIBCD1Q8N539 461 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 FBXO22Q8NEZ5 403 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 OR2T34Q8NGX1 318 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 OR2T3Q8NH03 318 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 PXYLP1Q8TE99 480 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 C19orf60Q96EN9 201 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 ANKRD60Q9BZ19 345 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 MARCH4Q9P2E8 410 aaPredicted RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 EGFL7Q9UHF1 273 aa12.48□□□□□ -0.41
RNF4-222ENST00000541204 FNDC3AQ9Y2H6 1198 aaKnown RBP12.48□□□□□ -0.41
RNF4-222ENST00000541204 A0A0J9YVX5 310 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 FAM149AA5PLN7 773 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 NR5A2O00482 541 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 PPP6CO00743 305 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 TSPAN3O60637 253 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 STAMBPO95630 424 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 GNAO1P09471 354 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 CDK9P50750 372 aaKnown RBP12.47□□□□□ -0.41
RNF4-222ENST00000541204 EMP3P54852 163 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 STX1BP61266 288 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 YBX1P67809 324 aaKnown RBP12.47□□□□□ -0.41
RNF4-222ENST00000541204 MYBPC3Q14896 1274 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 NPAS4Q8IUM7 802 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 LRRC49Q8IUZ0 686 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 ARRDC2Q8TBH0 407 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 SMIM14Q96QK8 99 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 AKTIPQ9H8T0 292 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 OLA1Q9NTK5 396 aaKnown RBP12.47□□□□□ -0.41
RNF4-222ENST00000541204 IL37Q9NZH6 218 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 VWA7Q9Y334 891 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 FRMPD3Q5JV73 1810 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 TANC1Q9C0D5 1861 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 PATJQ8NI35 1801 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 IGLV3-10A0A075B6K4 115 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 A0A0J9YYE9 177 aa12.47□□□□□ -0.41
RNF4-222ENST00000541204 FAM92AA1XBS5 289 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms