RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 GAREM2Q75VX8 874 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 S100A14Q9HCY8 104 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 IKZF3Q9UKT9 509 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 EIF4E1BA6NMX2 242 aaKnown RBP13.72□□□□□ -0.21
RTN3-210ENST00000540798 TSPAN12O95859 305 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 TIMP1P01033 207 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 FMO4P31512 558 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 MC4RP32245 332 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 ABL2P42684 1182 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 CSNK1DP48730 415 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 TTPAP49638 278 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 AP1S1P61966 158 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 NXNQ6DKJ4 435 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 PAQR3Q6TCH7 311 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 DSELQ8IZU8 1212 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 C1QTNF3Q9BXJ4 246 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 MAGEE1Q9HCI5 957 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 IL17CQ9P0M4 197 aa13.72□□□□□ -0.21
RTN3-210ENST00000540798 NDUFS3O75489 264 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 PDE5AO76074 875 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 SRP72O76094 671 aaKnown RBP13.71□□□□□ -0.21
RTN3-210ENST00000540798 RHOBTB1O94844 696 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 RHOAP61586 193 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 MPP7Q5T2T1 576 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 FAM117BQ6P1L5 589 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 LILRA6Q6PI73 481 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 LARP4Q71RC2 724 aaKnown RBP eCLIP13.71□□□□□ -0.21
RTN3-210ENST00000540798 HPS6Q86YV9 775 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 PTGR2Q8N8N7 351 aaPredicted RBP13.71□□□□□ -0.21
RTN3-210ENST00000540798 DNAJC9Q8WXX5 260 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 FCF1Q9Y324 198 aaKnown RBP13.71□□□□□ -0.21
RTN3-210ENST00000540798 COMMD10Q9Y6G5 202 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 CXorf51AA0A1B0GTR3 108 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 TYW5A2RUC4 315 aaKnown RBP13.71□□□□□ -0.21
RTN3-210ENST00000540798 UBXN8O00124 270 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 CTSAP10619 480 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 NUDT2P50583 147 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 ATP4BP51164 291 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 SQLEQ14534 574 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 PTPRRQ15256 657 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 PGAM4Q8N0Y7 254 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 STAG3L4Q8TBR4 150 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 GRIN3AQ8TCU5 1115 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 PIH1D2Q8WWB5 315 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 RCN3Q96D15 328 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 EID2BQ96D98 161 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 MARK4Q96L34 752 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 P2RY12Q9H244 342 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 GALPQ9UBC7 116 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 PPM1HQ9ULR3 514 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 ZNF510Q9Y2H8 683 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 ZNF711Q9Y462 761 aa13.71□□□□□ -0.21
RTN3-210ENST00000540798 UBA6A0AVT1 1052 aaPredicted RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 TGM5O43548 720 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 SUPT7LO94864 414 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 CDK14O94921 469 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 PGLSO95336 258 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 PKMP14618 531 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 EPHB1P54762 984 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 SESN3P58005 492 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 SH3BP2P78314 561 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 KANK2Q63ZY3 851 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 APCDD1Q8J025 514 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 NKAPQ8N5F7 415 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 NDE1Q9NXR1 346 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 TRIM43BA6NCK2 446 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 AIM2O14862 343 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 MT-CO1P00395 513 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 CNPP09543 421 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 CSF2RAP15509 400 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 HMGCLP35914 325 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 RPL26P61254 145 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 RAD51Q06609 339 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 CDH18Q13634 790 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 PTPRNQ16849 979 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 LRRC26Q2I0M4 334 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 PIGGQ5H8A4 983 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 ATXN7L2Q5T6C5 722 aaPredicted RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 MFN1Q8IWA4 741 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 CLYBLQ8N0X4 340 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 USP13Q92995 863 aaPredicted RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 VOPP1Q96AW1 172 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 TRIM43Q96BQ3 446 aaPredicted RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 LMLNQ96KR4 655 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 GPR21Q99679 349 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 SLC30A3Q99726 388 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 NRG2O14511 850 aaPredicted RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 SCAMP3O14828 347 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 STX7O15400 261 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 HTRA2O43464 458 aaPredicted RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 GABRR2P28476 465 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 NAA20P61599 178 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 CYP4F8P98187 520 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 ZNF423Q2M1K9 1284 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 AARS2Q5JTZ9 985 aaKnown RBP13.7□□□□□ -0.22
RTN3-210ENST00000540798 RNF111Q6ZNA4 994 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 KBTBD6Q86V97 674 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 CD200R1Q8TD46 325 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 KCNJ9Q92806 393 aa13.7□□□□□ -0.22
RTN3-210ENST00000540798 FUBP1Q96AE4 644 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms