RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 S1PR4O95977 384 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ATXN1LP0C7T5 689 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 OCM2P0CE71 109 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 OCMP0CE72 109 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 HTR7P34969 479 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TXNL4AP83876 142 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 NRG1Q02297 640 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 RAB39AQ14964 217 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TGFBIQ15582 683 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SLC14A2Q15849 920 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SIRPB2Q5JXA9 342 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PERM1Q5SV97 790 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 GPR158Q5T848 1215 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 KCTD8Q6ZWB6 473 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 LYSMD3Q7Z3D4 306 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 BTLAQ7Z6A9 289 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 CUZD1Q86UP6 607 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 GPR180Q86V85 440 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SOCS4Q8WXH5 440 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 DLG3Q92796 817 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 VPS33AQ96AX1 596 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 B3GALT6Q96L58 329 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ALG9Q9H6U8 611 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TSR3Q9UJK0 312 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 GMEB1Q9Y692 573 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SH3PXD2BA1X283 911 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 CLOCKO15516 846 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 KPNA6O60684 536 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SNAP29O95721 258 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SNRPB2P08579 225 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PAMP19021 973 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 POLR2IP36954 125 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 HSPA13P48723 471 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 C21orf59P57076 290 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 EFEMP1Q12805 493 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 HERC3Q15034 1050 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 RABL3Q5HYI8 236 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 CLLU1OSQ5K130 101 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 FBXL22Q6P050 247 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 CMTR2Q8IYT2 770 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ZBTB8BQ8NAP8 495 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 OR52K2Q8NGK3 314 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 STON2Q8WXE9 905 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PTERQ96BW5 349 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SERPINB11Q96P15 392 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ADI1Q9BV57 179 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TRIM62Q9BVG3 475 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 UNC93B1Q9H1C4 597 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 UPF3AQ9H1J1 476 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 GSTO2Q9H4Y5 243 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 EPS8L2Q9H6S3 715 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 POLR3BQ9NW08 1133 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SCML2Q9UQR0 700 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 NOD1Q9Y239 953 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 CRYL1Q9Y2S2 319 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 DOCK4Q8N1I0 1966 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 H3BMQ9 156 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 DLGAP1O14490 977 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 LDB2O43679 373 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 NRP2O60462 931 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SRP72O76094 671 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 LTA4HP09960 611 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PRSS56P0CW18 603 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 HSPA1AP0DMV8 641 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 HSPA1BP0DMV9 641 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TYMPP19971 482 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TNK2Q07912 1038 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 SEMA3AQ14563 771 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 GPR162Q16538 588 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 CYP2A13Q16696 494 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TRIM71Q2Q1W2 868 aaKnown RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 MARC1Q5VT66 337 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ZNF549Q6P9A3 640 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ISCA2Q86U28 154 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 DDIASQ8IXT1 998 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ATAD1Q8NBU5 361 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TADA1Q96BN2 335 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 VPS50Q96JG6 964 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 NSMCE3Q96MG7 304 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 COG8Q96MW5 612 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 TMEM74Q96NL1 305 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PRKD2Q9BZL6 878 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 MEAF6Q9HAF1 191 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 VPS45Q9NRW7 570 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 EXD2Q9NVH0 621 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 FAIMQ9NVQ4 179 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 UXTQ9UBK9 157 aaPredicted RBP12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PCDHB8Q9UN66 801 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 ZNF232Q9UNY5 417 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 VWA7Q9Y334 891 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 PCDHGA4Q9Y5G9 962 aa12.53□□□□□ -0.4
SFSWAP-208ENST00000539506 NME4O00746 187 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 ADSLP30566 484 aaPredicted RBP12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 ACVRL1P37023 503 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 FOXA1P55317 472 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 TBX4P57082 545 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 GRAMD4Q6IC98 578 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 KIAA0408Q6ZU52 694 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 MON1AQ86VX9 555 aa12.52□□□□□ -0.4
SFSWAP-208ENST00000539506 MIB1Q86YT6 1006 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms