RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 PTCH2Q9Y6C5 1203 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 NRP2O60462 931 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 IL1BP01584 269 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 CASP5P51878 434 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 SUZ12Q15022 739 aaKnown RBP10.62□□□□□ -0.71
CLIP1-209ENST00000537178 C9orf131Q5VYM1 1079 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 SULT1C3Q6IMI6 304 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 FAM183BPQ6ZVS7 135 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 SLCO6A1Q86UG4 719 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 C17orf64Q86WR6 236 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 FAM47BQ8NA70 645 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 OR4L1Q8NH43 312 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 ZNF563Q8TA94 476 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 PRRG4Q9BZD6 226 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.62□□□□□ -0.715e-9■■■■□ 19.5
CLIP1-209ENST00000537178 BPIFA1Q9NP55 256 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 SNX15Q9NRS6 342 aa10.62□□□□□ -0.71
CLIP1-209ENST00000537178 AGO1Q9UL18 857 aaKnown RBP10.62□□□□□ -0.71
CLIP1-209ENST00000537178 GNEQ9Y223 722 aaKnown RBP10.62□□□□□ -0.71
CLIP1-209ENST00000537178 MRPL42Q9Y6G3 142 aaKnown RBP10.62□□□□□ -0.71
CLIP1-209ENST00000537178 CACNB4O00305 520 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 DHX15O43143 795 aaKnown RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 LGALS2P05162 132 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TFPIP10646 304 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TSPAN8P19075 237 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PSMA1P25786 263 aaKnown RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PPP3CAQ08209 521 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 RASSF6Q6ZTQ3 369 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CORO1CQ9ULV4 474 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TRAF6Q9Y4K3 522 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TBL1XO60907 577 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 LINC00032P0C843 101 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 HNRNPLP14866 589 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CXCR3P49682 368 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CCNHP51946 323 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 VBP1P61758 197 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 C9orf64Q5T6V5 341 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 GPR135Q8IZ08 494 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ART4Q93070 314 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ELMO3Q96BJ8 720 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PDGFDQ9GZP0 370 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TNKS2Q9H2K2 1166 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TTYH1Q9H313 450 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SMURF2Q9HAU4 748 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 MTRRQ9UBK8 725 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 NRCAMQ92823 1304 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SAGE2PA6NJ88 616 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 XKRYO14609 159 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 REM1O75628 298 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 LRATO95237 230 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SLC25A14O95258 325 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CYP3A4P08684 503 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 LAMP2P13473 410 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 GLRA2P23416 452 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 AP3S2P59780 193 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CXCL9Q07325 125 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 UBAP2LQ14157 1087 aaKnown RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TYSND1Q2T9J0 566 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ZFP69Q49AA0 526 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CAPN13Q6MZZ7 669 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SPATA19Q7Z5L4 167 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PHF13Q86YI8 300 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 RAB43Q86YS6 212 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 FAM71AQ8IYT1 594 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SIX5Q8N196 739 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SRFBP1Q8NEF9 429 aaKnown RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 OR4A15Q8NGL6 344 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 HDAC10Q969S8 669 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 AP2M1Q96CW1 435 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 RTKNQ9BST9 563 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CCDC28BQ9BUN5 200 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CDH19Q9H159 772 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 RHOJQ9H4E5 214 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 TMEM27Q9HBJ8 222 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 EGFL7Q9UHF1 273 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 USP20Q9Y2K6 914 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SHOX2O60902 331 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 VEGFAP15692 232 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-209ENST00000537178 AKT2P31751 481 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SHMT1P34896 483 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 FATE1Q969F0 183 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 IGFLR1Q9H665 355 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PNPLA8Q9NP80 782 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SEC14L3Q9UDX4 400 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ADGRE2Q9UHX3 823 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ALOX15BO15296 676 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PLIN3O60664 434 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CCNKO75909 580 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SHBGP04278 402 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ASMTP46597 345 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 SLC12A3P55017 1021 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 CBX3Q13185 183 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 ZBTB6Q15916 424 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 DENND1CQ8IV53 801 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 PRELID2Q8N945 189 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 RNF31Q96EP0 1072 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 MCMBPQ9BTE3 642 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 KCNN2Q9H2S1 579 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 MUC13Q9H3R2 512 aa10.61□□□□□ -0.71
CLIP1-209ENST00000537178 BTNL10A8MVZ5 291 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms